Mercurial > repos > iuc > dada2_removebimeradenovo
comparison dada2_removeBimeraDenovo.xml @ 6:1bc3657cd694 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit ea6c9c638e742c097b0ef294161eeea447c09e06
author | iuc |
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date | Fri, 30 Jun 2023 07:55:53 +0000 |
parents | 5b752525bd6f |
children | 7136e9ab70db |
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5:7f3b59dee073 | 6:1bc3657cd694 |
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1 <tool id="dada2_removeBimeraDenovo" name="dada2: removeBimeraDenovo" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09"> | 1 <tool id="dada2_removeBimeraDenovo" name="dada2: removeBimeraDenovo" version="@DADA2_VERSION@+galaxy@WRAPPER_VERSION@" profile="19.09"> |
2 <description>Remove bimeras from collections of unique sequences</description> | 2 <description>Remove bimeras from collections of unique sequences</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="bio_tools"/> | |
6 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
7 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
8 <expand macro="version_command"/> | 9 <expand macro="version_command"/> |
9 <command detect_errors="exit_code"><![CDATA[ | 10 <command detect_errors="exit_code"><![CDATA[ |
10 Rscript '$dada2_script' | 11 Rscript '$dada2_script' |
54 <outputs> | 55 <outputs> |
55 <!-- fix output filters in a later release https://github.com/galaxyproject/galaxy/issues/7464 --> | 56 <!-- fix output filters in a later release https://github.com/galaxyproject/galaxy/issues/7464 --> |
56 <data name="stable_uniques" format="dada2_uniques" label="${tool.name} on ${on_string}" from_work_dir="nonchim.uniques"> | 57 <data name="stable_uniques" format="dada2_uniques" label="${tool.name} on ${on_string}" from_work_dir="nonchim.uniques"> |
57 <filter>unqs.ext == "dada2_dada"</filter> | 58 <filter>unqs.ext == "dada2_dada"</filter> |
58 </data> | 59 </data> |
59 <data name="stable_mergepairs" format="dada2_mergepairs" label="${tool.name} on ${on_string}" from_work_dir="nonchim.mergepairs"> | 60 <data name="stable_mergepairs" format="dada2_mergepairs" label="${tool.name} on ${on_string}: mergePairs" from_work_dir="nonchim.mergepairs"> |
60 <filter>unqs.ext == "dada2_mergepairs"</filter> | 61 <filter>unqs.ext == "dada2_mergepairs"</filter> |
61 </data> | 62 </data> |
62 <data name="stable_sequencetable" format="dada2_sequencetable" label="${tool.name} on ${on_string}" from_work_dir="nonchim.mergepairs"> | 63 <data name="stable_sequencetable" format="dada2_sequencetable" label="${tool.name} on ${on_string}: sequencetable" from_work_dir="nonchim.mergepairs"> |
63 <filter>unqs.ext == "dada2_sequencetable"</filter> | 64 <filter>unqs.ext == "dada2_sequencetable"</filter> |
64 </data> | 65 </data> |
65 </outputs> | 66 </outputs> |
66 <tests> | 67 <tests> |
67 <test expect_num_outputs="1"> | 68 <test expect_num_outputs="1"> |