Mercurial > repos > iuc > dada2_removebimeradenovo
comparison dada2_removeBimeraDenovo.xml @ 2:5b752525bd6f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
| author | iuc |
|---|---|
| date | Mon, 16 Mar 2020 07:37:41 -0400 |
| parents | 7f8f0e9fcb37 |
| children | 1bc3657cd694 |
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| 1:7f8f0e9fcb37 | 2:5b752525bd6f |
|---|---|
| 63 <filter>unqs.ext == "dada2_sequencetable"</filter> | 63 <filter>unqs.ext == "dada2_sequencetable"</filter> |
| 64 </data> | 64 </data> |
| 65 </outputs> | 65 </outputs> |
| 66 <tests> | 66 <tests> |
| 67 <test expect_num_outputs="1"> | 67 <test expect_num_outputs="1"> |
| 68 <param name="unqs" ftype="dada2_sequencetable" value="makeSequenceTable_F3D0.tab"/> | 68 <param name="unqs" ftype="dada2_sequencetable" value="makeSequenceTable.tab"/> |
| 69 <output name="stable_sequencetable" value="removeBimeraDenovo_F3D0.tab" ftype="dada2_sequencetable" /> | 69 <output name="stable_sequencetable" value="removeBimeraDenovo.tab" ftype="dada2_sequencetable" /> |
| 70 </test> | 70 </test> |
| 71 <!-- dada input --> | 71 <!-- dada input --> |
| 72 <test expect_num_outputs="1"> | 72 <test expect_num_outputs="1"> |
| 73 <param name="unqs" ftype="dada2_dada" value="dada_F3D0_R1.Rdata"/> | 73 <param name="unqs" ftype="dada2_dada" value="dada_F3D0_S188_L001_R1.Rdata"/> |
| 74 <output name="stable_uniques" value="removeBimeraDenovo_F3D0_dada_uniques.tab" ftype="dada2_uniques" /> | 74 <output name="stable_uniques" value="removeBimeraDenovo_F3D0_dada_uniques.tab" ftype="dada2_uniques" /> |
| 75 </test> | 75 </test> |
| 76 <!-- mergepairs input + non default--> | 76 <!-- mergepairs input + non default--> |
| 77 <test expect_num_outputs="1"> | 77 <test expect_num_outputs="1"> |
| 78 <param name="unqs" ftype="dada2_mergepairs" value="mergePairs_F3D0.Rdata"/> | 78 <param name="unqs" ftype="dada2_mergepairs" value="mergePairs_F3D0_S188_L001.Rdata"/> |
| 79 <param name="method" value="pooled"/> | 79 <param name="method" value="pooled"/> |
| 80 <output name="stable_mergepairs" value="removeBimeraDenovo_F3D0_mergepairs.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400"/> | 80 <output name="stable_mergepairs" value="removeBimeraDenovo_F3D0_mergepairs.Rdata" ftype="dada2_mergepairs" compare="sim_size" delta="400"/> |
| 81 </test> | 81 </test> |
| 82 </tests> | 82 </tests> |
| 83 <help><![CDATA[ | 83 <help><![CDATA[ |