directory /test-data/ @ 5:7f3b59dee073 draft

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file F3D0_S188_L001_R1_001.fastq.gz 75124 -rw-r--r--
file F3D0_S188_L001_R1_001.tab 59 -rw-r--r--
file F3D0_S188_L001_R2_001.fastq.gz 102152 -rw-r--r--
file F3D141_S207_L001_R1_001.fastq.gz 70756 -rw-r--r--
file F3D141_S207_L001_R1_001.tab 61 -rw-r--r--
file F3D141_S207_L001_R2_001.fastq.gz 101187 -rw-r--r--
file assignTaxonomyAddspecies.tab 9798 -rw-r--r--
file assignTaxonomyAddspecies_boot.tab 8536 -rw-r--r--
file complexity.pdf 5176 -rw-r--r--
file complexity_fwd.pdf 5995 -rw-r--r--
file complexity_rev.pdf 6001 -rw-r--r--
file dada2_species.loc 447 -rw-r--r--
file dada2_taxonomy.loc 473 -rw-r--r--
file dada_F3D0_S188_L001_R1.Rdata 41788 -rw-r--r--
file dada_F3D0_S188_L001_R2.Rdata 38444 -rw-r--r--
file dada_F3D141_S207_L001_R1.Rdata 32630 -rw-r--r--
file dada_F3D141_S207_L001_R2.Rdata 27810 -rw-r--r--
file filterAndTrim.tab 61 -rw-r--r--
file filterAndTrim_F3D0_R1.fq.gz 74613 -rw-r--r--
file filterAndTrim_F3D0_R2.fq.gz 101226 -rw-r--r--
file filterAndTrim_F3D141_R1.fq.gz 70198 -rw-r--r--
file filterAndTrim_F3D141_R2.fq.gz 99746 -rw-r--r--
file filterAndTrim_single_F3D0_R1.fq.gz 32255 -rw-r--r--
file filterAndTrim_single_F3D141_R1.fq.gz 41171 -rw-r--r--
file filterAndTrim_single_filters_F3D0_R1.fq.gz 13372 -rw-r--r--
file filterAndTrim_single_filters_F3D141_R1.fq.gz 14212 -rw-r--r--
file filterAndTrim_single_trimmers_F3D0_R1.fq.gz 12875 -rw-r--r--
file filterAndTrim_single_trimmers_F3D141_R1.fq.gz 12677 -rw-r--r--
file gentest.R 7859 -rw-r--r--
file learnErrors_R1.Rdata 14233 -rw-r--r--
file learnErrors_R2.Rdata 14504 -rw-r--r--
file makeSequenceTable.pdf 4545 -rw-r--r--
file makeSequenceTable.tab 8054 -rw-r--r--
file mergePairs_F3D0_S188_L001.Rdata 1632 -rw-r--r--
file mergePairs_F3D0_S188_L001_nondefault.Rdata 2790 -rw-r--r--
file mergePairs_F3D141_S207_L001.Rdata 1050 -rw-r--r--
file mergePairs_F3D141_S207_L001_nondefault.Rdata 1977 -rw-r--r--
file qualityProfile.pdf 27310 -rw-r--r--
file qualityProfile_fwd.pdf 48761 -rw-r--r--
file qualityProfile_rev.pdf 52974 -rw-r--r--
file reference.fa.gz 67096 -rw-r--r--
file reference_species.fa.gz 32638 -rw-r--r--
file removeBimeraDenovo.tab 8054 -rw-r--r--
file removeBimeraDenovo_F3D0_dada_uniques.tab 10945 -rw-r--r--
file removeBimeraDenovo_F3D0_mergepairs.Rdata 2021 -rw-r--r--
file seqCounts_dadaF.tab 82 -rw-r--r--
file seqCounts_filter.tab 75 -rw-r--r--
file seqCounts_filter_both.tab 111 -rw-r--r--
file seqCounts_merge.tab 88 -rw-r--r--
file seqCounts_nochim.tab 55 -rw-r--r--
file seqCounts_seqtab.tab 55 -rw-r--r--