diff data_manager/bakta_build_database.xml @ 0:a19189a128cb draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit fba6deae1d3707e0c14202433d0495e157745afd

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/bakta_build_database.xml	Sat Dec 10 21:52:28 2022 +0000
@@ -0,0 +1,49 @@
+<tool id="bakta_build_database" name="Bakta" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>Bakta database builder</description>
+    <macros>
+        <import>macro.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code">
+      <![CDATA[
+        python '$__tool_directory__/bakta_build_database.py'
+        '$output_file'
+        --database_version '$database_select'
+        $test_data_manager
+      ]]></command>
+    <inputs>
+        <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)">
+            <option value="latest" selected="true">Latest available version</option>
+            <option value="1.0">V1.0_2020-11-20</option>
+            <option value="1.1">V1.1_2020-12-18</option>
+            <option value="2.0">V2.0_2021-04-05</option>
+            <option value="3.0">V3.0_2021-08-05</option>
+            <option value="3.1">V3.1_2022-02-03</option>
+            <option value="4.0">V4.0_2022-08-29</option>
+        </param>
+        <param name="test_data_manager" type="hidden" value=""/>
+    </inputs>
+    <outputs>
+        <data name="output_file" format="data_manager_json"/>
+    </outputs>
+    <tests>
+        <!-- Test 1 with version 1.0 -->
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test"/>
+            <param name="database_select" value="1.0"/>
+            <output name="output_file" value="bakta_test_data_manager.json" />
+        </test>
+        <!-- Test 2 with the latest option -->
+        <test expect_num_outputs="1">
+            <param name="test_data_manager" value="--test"/>
+            <param name="database_select" value="latest"/>
+            <output name="output_file" value="bakta_test_data_manager_test2.json" />
+        </test>
+    </tests>
+    <help><![CDATA[
+        Download specific version of Bakta database <https://github.com/oschwengers/bakta#database>
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1099/mgen.0.000685</citation>
+    </citations>
+</tool>