Mercurial > repos > iuc > data_manager_bowtie_index_builder
changeset 2:086edfff112b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 356a04ca3fb988f20fb63ccf053ef9f62a3d002f
| author | iuc |
|---|---|
| date | Sun, 18 Sep 2016 08:21:09 -0400 |
| parents | 35c1e3785c90 |
| children | ea5faedd0795 |
| files | data_manager/bowtie_color_space_index_builder.xml data_manager/bowtie_index_builder.py data_manager/bowtie_index_builder.xml tool_dependencies.xml |
| diffstat | 4 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/data_manager/bowtie_color_space_index_builder.xml Sun Sep 18 07:22:06 2016 -0400 +++ b/data_manager/bowtie_color_space_index_builder.xml Sun Sep 18 08:21:09 2016 -0400 @@ -1,7 +1,7 @@ -<tool id="bowtie_color_space_index_builder_data_manager" name="Bowtie Color index" tool_type="manage_data" version="0.0.2"> +<tool id="bowtie_color_space_index_builder_data_manager" name="Bowtie Color index" tool_type="manage_data" version="0.0.3"> <description>builder</description> <requirements> - <requirement type="package" version="0.12.7">bowtie</requirement> + <requirement type="package" version="1.1.2">bowtie</requirement> </requirements> <command interpreter="python"> bowtie_index_builder.py
--- a/data_manager/bowtie_index_builder.py Sun Sep 18 07:22:06 2016 -0400 +++ b/data_manager/bowtie_index_builder.py Sun Sep 18 08:21:09 2016 -0400 @@ -32,7 +32,7 @@ os.symlink( fasta_filename, sym_linked_fasta_filename ) args = [ 'bowtie-build' ] if color_space: - args.append( '-c' ) + args.append( '-C' ) args.append( sym_linked_fasta_filename) args.append( fasta_base_name ) args.append( sym_linked_fasta_filename )
--- a/data_manager/bowtie_index_builder.xml Sun Sep 18 07:22:06 2016 -0400 +++ b/data_manager/bowtie_index_builder.xml Sun Sep 18 08:21:09 2016 -0400 @@ -1,7 +1,7 @@ -<tool id="bowtie_index_builder_data_manager" name="Bowtie index" tool_type="manage_data" version="0.0.2"> +<tool id="bowtie_index_builder_data_manager" name="Bowtie index" tool_type="manage_data" version="0.0.3"> <description>builder</description> <requirements> - <requirement type="package" version="0.12.7">bowtie</requirement> + <requirement type="package" version="1.1.2">bowtie</requirement> </requirements> <command interpreter="python"> bowtie_index_builder.py
--- a/tool_dependencies.xml Sun Sep 18 07:22:06 2016 -0400 +++ b/tool_dependencies.xml Sun Sep 18 08:21:09 2016 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="bowtie" version="0.12.7"> - <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="bowtie" version="1.1.2"> + <repository changeset_revision="a1c1a92e13a6" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>