comparison data_manager/kraken2_build_database.xml @ 15:201eff2131d6 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit f43fe4223c7cca2dac7549c3dee7e766378588da

14:8c533e19b697

<tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">2.1.3</token>
        <token name="@VERSION_SUFFIX@">5</token>
        <token name="@PROFILE@">22.01</token>
        <xml name="common_params">
            <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" />
            <param name="minimizer_len" type="integer" value="31" label="Minimizer length" />
            <param name="minimizer_spaces" type="integer" value="7" label="Minimizer spaces" />

                <expand macro="common_params" />
            </when>
            <when value="standard_prebuilt">
                <conditional name="prebuild">
                    <param name="prebuilt_date" type="select" label="Select index build date">
                        <option value="2024-09-04">September 4, 2024</option>
                        <option value="2024-06-05">June 5, 2024</option>
                        <option value="2024-01-12">January 12, 2024</option>
                        <option value="2023-06-05">June 5, 2023</option>
                        <option value="2022-06-07">June 7, 2022</option>
                        <option value="2021-05-17">May 17, 2021</option>
                        <option value="2021-01-27">January 27, 2021</option>
                        <option value="2020-12-02">December 2, 2020</option>
                        <option value="2020-09-19">September 19, 2020</option>
                    </param>
                    <when value="2024-09-04">
                        <param name="prebuilt_db" type="select" label="Select a prebuilt Refseq index to download">
                            <expand macro="viral"/>
                            <expand macro="minusb"/>
                            <expand macro="standard"/>

15:201eff2131d6

<tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>database builder</description>
    <macros>
        <token name="@TOOL_VERSION@">2.1.3</token>
        <token name="@VERSION_SUFFIX@">6</token>
        <token name="@PROFILE@">22.01</token>
        <xml name="common_params">
            <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" />
            <param name="minimizer_len" type="integer" value="31" label="Minimizer length" />
            <param name="minimizer_spaces" type="integer" value="7" label="Minimizer spaces" />

                <expand macro="common_params" />
            </when>
            <when value="standard_prebuilt">
                <conditional name="prebuild">
                    <param name="prebuilt_date" type="select" label="Select index build date">
                        <option value="2024-12-28">December 28, 2024</option>
                        <option value="2024-09-04">September 4, 2024</option>
                        <option value="2024-06-05">June 5, 2024</option>
                        <option value="2024-01-12">January 12, 2024</option>
                        <option value="2023-06-05">June 5, 2023</option>
                        <option value="2022-06-07">June 7, 2022</option>
                        <option value="2021-05-17">May 17, 2021</option>
                        <option value="2021-01-27">January 27, 2021</option>
                        <option value="2020-12-02">December 2, 2020</option>
                        <option value="2020-09-19">September 19, 2020</option>
                    </param>
                    <when value="2024-12-28">
                        <param name="prebuilt_db" type="select" label="Select a prebuilt Refseq index to download">
                            <expand macro="viral"/>
                            <expand macro="minusb"/>
                            <expand macro="standard"/>
                            <expand macro="standard_08gb"/>
                            <expand macro="standard_16gb"/>
                            <expand macro="pluspf"/>
                            <expand macro="pluspf_08gb"/>
                            <expand macro="pluspf_16gb"/>
                            <expand macro="pluspfp"/>
                            <expand macro="pluspfp_08gb"/>
                            <expand macro="pluspfp_16gb"/>
                            <expand macro="core_nt"/>
                        </param>
                    </when>
                    <when value="2024-09-04">
                        <param name="prebuilt_db" type="select" label="Select a prebuilt Refseq index to download">
                            <expand macro="viral"/>
                            <expand macro="minusb"/>
                            <expand macro="standard"/>