Mercurial > repos > iuc > data_manager_build_kraken2_database

diff data_manager/kraken2_build_database.py @ 14:8c533e19b697 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 66be7bc4e07926c3645ba87f78702f2267fad7b3
author iuc
date Fri, 13 Dec 2024 21:18:31 +0000
parents e9ee4d074d5d
children
line wrap: on
line diff
--- a/data_manager/kraken2_build_database.py	Fri Nov 15 22:31:29 2024 +0000
+++ b/data_manager/kraken2_build_database.py	Fri Dec 13 21:18:31 2024 +0000
@@ -66,6 +66,8 @@
     pluspfp_08gb = "pluspfp_08gb"
     pluspfp_16gb = "pluspfp_16gb"
     eupathdb48 = "eupathdb48"
+    core_nt = "core_nt"
+    gtdb_genome_reps = "gtdb_genome_reps"
 
     def __str__(self):
         return self.value
@@ -148,6 +150,8 @@
         'pluspfp_08gb': "PlusPFP-8 (PlusPFP with DB capped at 8 GB)",
         'pluspfp_16gb': "PlusPFP-16 (PlusPFP with DB capped at 16 GB)",
         'eupathdb48': "EuPathDB-46",
+        'core_nt': "core_nt (Very large collection, inclusive of GenBank, RefSeq, TPA and PDB)",
+        'gtdb_genome_reps': "GTDB v220 (Bacterial and archaeal)",
     }
 
     database_value = "_".join([