Mercurial > repos > iuc > data_manager_build_staramr
annotate tool-data/staramr_database.loc.sample @ 1:0b367fda55da draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit c6d65d9483f36537099fd7007aadc371252c4fa9
| author | iuc | 
|---|---|
| date | Thu, 27 Feb 2025 11:47:34 +0000 | 
| parents | 3658cf4b6fd2 | 
| children | 
| rev | line source | 
|---|---|
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
1 #This is a tab separated file describing the location of StarAMR databases | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
2 #used for the StarAMR tool | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
3 # | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
4 #file has this format (white space characters are TAB characters) | 
| 
 
3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
5 # | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
6 #The columns are: | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
7 #value name path resfinder_commit pointfinder_commit plasmidfinder_commit | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
8 # | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
9 #For example | 
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3658cf4b6fd2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
 
iuc 
parents:  
diff
changeset
 | 
10 #staramr_downloaded_20241004_resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502 ResFinder: tag 4.6.0, commit d1e607b, 2024-08-06 - PointFinder: tag 4.1.1, commit 694919f, 2024-08-08 - PlasmidFinder: commit 3e77502, 2024-03-07 (downloaded 20241004) /path/to/data d1e607b 694919f 3e77502 | 
