Mercurial > repos > iuc > data_manager_build_staramr
diff data_manager_conf.xml @ 0:3658cf4b6fd2 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
| author | iuc |
|---|---|
| date | Thu, 16 Jan 2025 08:28:55 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Thu Jan 16 08:28:55 2025 +0000 @@ -0,0 +1,22 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/data_manager_build_staramr_download.xml" id="data_manager_build_staramr_download"> + <data_table name="staramr_database"> <!-- Defines a Data Table to be modified. --> + <output> <!-- Handle the output of the Data Manager Tool --> + <column name="value"/> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="name"/> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="path" output_ref="out_file"> + <move type="directory"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">staramr/${path}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/staramr/${path}</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + <column name="resfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="pointfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="plasmidfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool --> + </output> + </data_table> + </data_manager> +</data_managers>