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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit c6d65d9483f36537099fd7007aadc371252c4fa9
author iuc
date Thu, 27 Feb 2025 11:47:34 +0000
parents 3658cf4b6fd2
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager_build_staramr_download.xml" id="data_manager_build_staramr_download">
        <data_table name="staramr_database">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value"/>  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name"/>  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file">
                    <move type="directory">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">staramr/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/staramr/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
                <column name="resfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="pointfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="plasmidfinder_commit"/> <!-- columns that are going to be specified by the Data Manager Tool -->
            </output>
        </data_table>
    </data_manager>
</data_managers>