Mercurial > repos > iuc > data_manager_bwameth_index_builder
comparison data_manager/bwameth_index_builder.py @ 3:e7ca32457e36 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/data_managers/data_manager_bwameth_index_builder commit 471c497769f0dbfa92ec1a91f4044062cb5f7a83
| author | iuc |
|---|---|
| date | Thu, 21 Sep 2017 13:05:25 -0400 |
| parents | a7fb84abef45 |
| children | 5ab25caa7b7d |
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| 2:82a21d695a6b | 3:e7ca32457e36 |
|---|---|
| 22 proc = subprocess.Popen(args=cmd, shell=False, cwd=target_directory) | 22 proc = subprocess.Popen(args=cmd, shell=False, cwd=target_directory) |
| 23 return_code = proc.wait() | 23 return_code = proc.wait() |
| 24 if return_code: | 24 if return_code: |
| 25 print >> sys.stderr, "Error building index." | 25 print >> sys.stderr, "Error building index." |
| 26 sys.exit( return_code ) | 26 sys.exit( return_code ) |
| 27 data_table_entry = dict(value=args.dbKey, dbkey=args.dbkey, name=args.name, path=args.dbKey) | 27 data_table_entry = dict(value=args.dbkey, dbkey=args.dbkey, name=args.name, path=sym_linked_fasta_filename) |
| 28 _add_data_table_entry(data_manager_dict, data_table_name, data_table_entry) | 28 _add_data_table_entry(data_manager_dict, data_table_name, data_table_entry) |
| 29 | 29 |
| 30 | 30 |
| 31 def _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry ): | 31 def _add_data_table_entry( data_manager_dict, data_table_name, data_table_entry ): |
| 32 data_manager_dict['data_tables'] = data_manager_dict.get( 'data_tables', {} ) | 32 data_manager_dict['data_tables'] = data_manager_dict.get( 'data_tables', {} ) |