Mercurial > repos > iuc > data_manager_dada2
comparison test-data/dada2_taxonomy.loc @ 8:0181efacb40a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
| author | iuc |
|---|---|
| date | Sat, 22 Nov 2025 20:07:44 +0000 |
| parents | f57c13f5878b |
| children |
comparison
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| 7:678176bff643 | 8:0181efacb40a |
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| 5 # <unique_build_id> <display_name> <fasta_file_path> <taxlevels> | 5 # <unique_build_id> <display_name> <fasta_file_path> <taxlevels> |
| 6 # | 6 # |
| 7 # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html | 7 # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html |
| 8 # | 8 # |
| 9 # taxlevels is a comma separated list of taxonomy levels | 9 # taxlevels is a comma separated list of taxonomy levels |
| 10 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 11 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 12 silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 13 silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 14 silva_132 Silva version 132 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 15 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 16 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 17 rdp_16 RDP trainset 16 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 18 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 19 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 20 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 21 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 22 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 23 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 24 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 25 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 26 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 27 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpbccvw1gs/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 28 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpbccvw1gs/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 29 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 30 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 31 silva_138 Silva version 138 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 32 silva_138 Silva version 138 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 33 silva_132 Silva version 132 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 34 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 35 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 36 rdp_16 RDP trainset 16 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 37 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 38 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 39 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 40 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 41 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 42 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 43 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 44 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 45 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpexepu7wk/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 46 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 47 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 48 silva_138 Silva version 138 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 49 silva_132 Silva version 132 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 50 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 51 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 52 rdp_16 RDP trainset 16 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 53 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 54 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 55 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 56 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 57 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 58 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 59 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 60 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 61 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 62 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpoxu94mpp/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 63 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 64 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 65 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 66 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 67 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 68 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 69 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 70 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 71 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 72 greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 73 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 74 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 75 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 76 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 77 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 78 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 79 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 80 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 81 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 82 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 83 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 84 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 85 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 86 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 87 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 88 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 89 greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 90 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 91 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 92 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 93 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 94 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 95 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 96 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 97 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 98 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 99 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 100 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 101 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 102 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 103 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 104 greengenes_13.84 GreenGenes version 13.84 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 105 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 106 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 107 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 108 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 109 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 110 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 111 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 112 silva_138 Silva version 138 /tmp/tmp7bm731ex/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 113 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 114 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 115 silva_138 Silva version 138 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 116 silva_132 Silva version 132 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 117 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 118 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 119 rdp_16 RDP trainset 16 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 120 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 121 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 122 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 123 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 124 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 125 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 126 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 127 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 128 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 129 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 130 silva_138 Silva version 138 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 131 silva_132 Silva version 132 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 132 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 133 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 134 rdp_16 RDP trainset 16 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 135 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 136 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 137 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 138 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 139 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 140 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 141 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 142 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 143 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 144 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 145 silva_138 Silva version 138 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 146 silva_132 Silva version 132 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 147 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 148 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 149 rdp_16 RDP trainset 16 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 150 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 151 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 152 greengenes_13.84 GreenGenes version 13.84 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 153 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 154 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 155 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 156 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 157 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 158 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 159 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 160 silva_138 Silva version 138 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 161 silva_132 Silva version 132 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 162 rdp_16 RDP trainset 16 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 163 silva_138.2_toGenus Silva version 138.2 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 164 silva_138.2_toSpecies Silva version 138.2 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 165 silva_138 Silva version 138 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 166 silva_132 Silva version 132 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 167 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 168 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 169 rdp_16 RDP trainset 16 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 170 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 171 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 172 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 173 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 174 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 175 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 176 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 177 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 178 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 179 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 180 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 181 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 182 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 183 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 184 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 185 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 186 silva_138 Silva version 138 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 187 silva_132 Silva version 132 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 188 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 189 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 190 rdp_16 RDP trainset 16 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 191 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 192 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 193 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 194 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 195 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 196 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 197 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 198 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 199 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 200 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 201 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 202 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 203 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 204 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 205 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 206 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 207 silva_138 Silva version 138 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 208 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 209 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 210 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 211 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 212 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 213 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 214 silva_138 Silva version 138 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 215 silva_132 Silva version 132 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 216 rdp_19_toSpecies RDP trainset 19 to Species (for long read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 217 rdp_19_toGenus RDP trainset 19 to Genus (for short read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 218 rdp_16 RDP trainset 16 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 219 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 220 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short read 16S) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 221 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 222 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 223 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 224 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 225 gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 226 gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 227 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 228 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 229 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 230 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 231 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 232 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 233 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 234 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 235 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 236 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 237 silva_138 Silva version 138 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 238 silva_132 Silva version 132 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 239 rdp_19_toSpecies RDP trainset 19 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 240 rdp_19_toGenus RDP trainset 19 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 241 rdp_16 RDP trainset 16 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 242 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long read) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 243 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 244 greengenes_13.84 GreenGenes version 13.84 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 245 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 246 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 247 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 248 gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 249 gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 250 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 251 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 252 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 253 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species | |
| 254 silva_138.2_toGenus Silva version 138.2 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 255 silva_138.2_toSpecies Silva version 138.2 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 256 silva_138.2_fungi_18S_toGenus Silva version 138.2 for Fungi 18S to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 257 silva_138.2_fungi_18S_toSpecies Silva version 138.2 for Fungi 18S to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 258 silva_138.2_fungi_26S_toGenus Silva version 138.2 for Fungi 26S to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 259 silva_138.2_fungi_26S_toSpecies Silva version 138.2 for Fungi 26S to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 260 silva_138 Silva version 138 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 261 silva_132 Silva version 132 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 262 rdp_19_toSpecies RDP trainset 19 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_19_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 263 rdp_19_toGenus RDP trainset 19 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_19_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 264 rdp_16 RDP trainset 16 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_16.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 265 greengenes2_2024.09_toSpecies GreenGenes2 release 2024.09 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 266 greengenes2_2024.09_toGenus GreenGenes2 release 2024.09 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes2_2024.09_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 267 greengenes_13.84 GreenGenes version 13.84 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/greengenes_13.84.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 268 unite_8.0_fungi UNITE: General Fasta release 8.0 for Fungi /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/unite_8.0_fungi.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 269 unite_8.0_fungi_singletons UNITE: General Fasta release 8.0 for Fungi including global and 97% singletons /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/unite_8.0_fungi_singletons.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 270 RefSeq_RDP_2018_05 NCBI RefSeq 16S rRNA database supplemented by RDP (05/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/RefSeq_RDP_2018_05.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 271 gtdb_202_toGenus GTDB Version 202 to Genus (for short reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202_toGenus.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 272 gtdb_202_toSpecies GTDB Version 202 to Species (for long reads) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202_toSpecies.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 273 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_2018_11.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 274 hitdb_1 HitDB version 1 (Human InTestinal 16S rRNA) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/hitdb_1.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 275 silva_euk_18S_132 Silva version 132 Eukaryotic 18S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_euk_18S_132.taxonomy Kingdom,Phylum,Class,Order,Family,Genus,Species | |
| 276 PR2_4.11.1 Protist Ribosomal Reference database (PR2) 4.11.1 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/PR2_4.11.1.taxonomy Kingdom,Supergroup,Division,Class,Order,Family,Genus,Species |