Mercurial > repos > iuc > data_manager_dram_database_downloader
changeset 1:40c8fc0a2bb0 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dram_database_downloader commit 08664fb0e31a61514b787021d54ee5464be6043d
| author | iuc |
|---|---|
| date | Tue, 13 Sep 2022 09:08:55 +0000 |
| parents | bd342a6a5b0f |
| children | |
| files | README |
| diffstat | 1 files changed, 16 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Tue Sep 13 09:08:55 2022 +0000 @@ -0,0 +1,16 @@ +If Galaxy is configured such that outputs are written to the job working dir +the admin needs to perform one manual step to make the databases useable. +This is because DRAM creates a configuration file during installation, but the +file is written before the Galaxy job finishes, so the database locations are +relative to the job working directory instead of the configured +GALAXY_DATA_MANAGER_DATA_PATH. + +It may be more ideal to perform this task as a second step in the data manager +tool, but DRAM will not allow the configuration file to be updated to point to +locations unless the databases exist in those locations. But the data manager +tool moves the databases to these locations as its last step, making it +impossible to update the DRAM configuration file as a second step of that tool. + +See +https://github.com/WrightonLabCSU/DRAM/wiki/5.-Managing%2C-updating-or-moving-a-DRAM-installation-and-databases +for details. \ No newline at end of file