diff data_manager/extract.py @ 7:8ef19ca5d289 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_busco/ commit 32f1099f18b41bf1efd1a039daf732809c77269e

--- a/data_manager/extract.py	Fri Apr 04 11:18:19 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-import json
-import os
-import re
-import sys
-
-busco_db = os.path.join(sys.argv[1], "lineages")
-busco_db_value = sys.argv[2]
-dmjson = sys.argv[3]
-
-content = []
-for d in os.scandir(busco_db):
-    if not d.is_dir():
-        continue
-    if not os.path.exists(os.path.join(d, "dataset.cfg")):
-        continue
-    name = re.sub(r"_odb\d+", "", d.name)
-    name = name.replace("_", " ").capitalize()
-    content.append({'value': d.name, 'name': name, 'db_value': busco_db_value})
-
-with open(dmjson, "w") as fh:
-    json.dump({"data_tables": {"busco_database_options": content}}, fh)
-
-print(f'{len(content)} x busco_db\n')