Mercurial > repos > iuc > data_manager_fetch_plasmidfinder

diff data_manager_conf.xml @ 0:b56071bdecad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_plasmidfinder commit f6d40bf94e015c2690e97c4b3533517b812f3bfb
author iuc
date Thu, 15 Jun 2023 09:14:08 +0000
parents
children 3542cd220bc3
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager_conf.xml	Thu Jun 15 09:14:08 2023 +0000
@@ -0,0 +1,20 @@
+<?xml version="1.0"?>
+<data_managers>
+    <data_manager tool_file="data_manager/plasmidfinder_fetch_database.xml" id="plasmidfinder_fetch_database">
+        <data_table name="plasmidfinder_database">
+            <output>
+                <column name="value" />
+                <column name="name" />
+                <column name="date" />
+                <column name="path" output_ref="output_file">
+                    <move type="directory" relativize_symlinks="True">
+                        <source>${path}</source>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">plasmidfinder-db/${name}</target>
+                    </move>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/plasmidfinder-db/${name}</value_translation>
+                    <value_translation type="function">abspath</value_translation>
+                </column>
+            </output>
+        </data_table>
+    </data_manager>
+</data_managers>