Mercurial > repos > iuc > data_manager_fetch_refseq
comparison data_manager_conf.xml @ 0:8b91891ae805 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit a572f1f01161527ff6ed4af05bb2e073a8ca903b
author | iuc |
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date | Mon, 01 Oct 2018 15:36:01 -0400 |
parents | |
children | f1e545aa76c7 |
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-1:000000000000 | 0:8b91891ae805 |
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1 <?xml version="1.0"?> | |
2 <data_managers> | |
3 <data_manager tool_file="data_manager/fetch_refseq.xml" id="fetch_genome_fetch_refseq"> | |
4 <data_table name="all_fasta"> | |
5 <output> | |
6 <column name="value" /> | |
7 <column name="dbkey" /> | |
8 <column name="name" /> | |
9 <column name="path" output_ref="output_file" > | |
10 <move type="file"> | |
11 <source>${path}</source> | |
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</target> | |
13 </move> | |
14 <value_translation>refseq/#echo str($dbkey).split('.')[1]#/${value}.fasta</value_translation> | |
15 <value_translation type="function">abspath</value_translation> | |
16 </column> | |
17 </output> | |
18 </data_table> | |
19 </data_manager> | |
20 </data_managers> |