comparison data_manager/fetch_refseq.xml @ 1:937f167631b1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 8cad1e44b2393cb36f60a4d705536dee235a8434

0:8b91891ae805

        <requirement type="package">requests</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
    python $__tool_directory__/fetch_refseq.py
      #if str( $advanced.advanced_selector ) == 'advanced':
        '${advanced.compress}'
      #end if
      --galaxy_datamanager_filename '${output_file}'
      --division_names ${division_names}
      --mol_types ${mol_types}
      #if str( $pin_date ) != 'NO':

                    <has_text text="refseq_plastid"/>
                    <has_text text="/refseq_plastid."/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
This data manager fetches FASTA format collections of proteins, nucleotides (genomic DNA) and RNA
from NCBI's RefSeq_ data collection.

1:937f167631b1

        <requirement type="package">requests</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
    python $__tool_directory__/fetch_refseq.py
      #if str( $advanced.advanced_selector ) == 'advanced':
        ${advanced.compress}
      #end if
      --galaxy_datamanager_filename '${output_file}'
      --division_names ${division_names}
      --mol_types ${mol_types}
      #if str( $pin_date ) != 'NO':

                    <has_text text="refseq_plastid"/>
                    <has_text text="/refseq_plastid."/>
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="division_names" value="plastid"/>
            <param name="mol_types" value="protein"/>
            <param name="pin_date" value="2018-03-14"/>            
            <param name="advanced_selector" value="advanced"/>
            <param name="compress" value="" />
            <output name="output_file">
                <assert_contents>
                    <has_text text="2018-03-14"/>
                    <has_text text="refseq_plastid"/>
                    <has_text text="/refseq_plastid."/>
                </assert_contents>
            </output>
        </test>

    </tests>
    <help><![CDATA[
This data manager fetches FASTA format collections of proteins, nucleotides (genomic DNA) and RNA
from NCBI's RefSeq_ data collection.