Mercurial > repos > iuc > data_manager_funannotate
diff data_manager/funannotate.xml @ 0:ef7f9e2f32f2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_funannotate commit 9613152729099079c7465c3d5d42005ef22ca91e"
author | iuc |
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date | Thu, 26 Aug 2021 06:54:45 +0000 |
parents | |
children | 8dff71edbce5 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/funannotate.xml Thu Aug 26 06:54:45 2021 +0000 @@ -0,0 +1,39 @@ +<tool id="data_manager_funannotate" name="Funannotate data manager" version="0.0.1" tool_type="manage_data" profile="20.01"> + <requirements> + <requirement type="package" version="1.8.7">funannotate</requirement> + </requirements> + <version_command>funannotate check --show-versions</version_command> + <command detect_errors="exit_code"><![CDATA[ +python '$__tool_directory__/funannotate.py' +$partial_data +\$(date +'%Y-%m-%d-%H%M%S') +'funannotate' +'${output_file}' + ]]></command> + <inputs> + <param name="partial_data" type="hidden" value="" help="Used for testing"/> + </inputs> + <outputs> + <data name="output_file" format="data_manager_json"/> + </outputs> + <tests> + <test> + <param name="partial_data" value="--partial"/> + <output name="output_file"> + <assert_contents> + <has_text text="Funannotate database "/> + <has_text text='"format_version": "1.0"'/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ + This data managers fetches data from various databases for the funannotate + annotation tool and updates the funannotate data table. + + .. _funannotate: https://funannotate.readthedocs.io + ]]></help> + <citations> + <citation type="doi">10.5281/zenodo.4054262</citation> + </citations> +</tool>