Mercurial > repos > iuc > data_manager_gemini_database_downloader
diff data_manager/data_manager_gemini_download.xml @ 0:fd9e9ac5ecb3 draft
Imported from capsule None
author | iuc |
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date | Mon, 25 Aug 2014 17:15:46 -0400 |
parents | |
children | a580422f6f1d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/data_manager_gemini_download.xml Mon Aug 25 17:15:46 2014 -0400 @@ -0,0 +1,37 @@ +<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.9.1" tool_type="manage_data"> + <description>Download a new database</description> + <requirements> + <requirement type="package" version="0.10.0">gemini</requirement> + </requirements> + <command interpreter="python"> + data_manager_gemini_download.py "$out_file" + </command> + <inputs> + <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" + label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/> + + <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" + label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/> + </inputs> + <outputs> + <data name="out_file" format="data_manager_json" label="${tool.name}"/> + </outputs> + <stdio> + <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> + <exit_code range="1:" level="fatal" description="Error" /> + </stdio> + <tests> + </tests> + <help> + +This tool downloads the GEMINI databases. + +For details about this tool, please go to http://http://gemini.readthedocs.org + + </help> + <citations> + <citation type="doi">10.1371/journal.pcbi.1003153</citation> + <yield /> + </citations> +</tool> +