Mercurial > repos > iuc > data_manager_gemini_database_downloader
view data_manager/data_manager_gemini_download.xml @ 2:345412d58d75 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
author | iuc |
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date | Thu, 18 Feb 2016 08:49:06 -0500 |
parents | a580422f6f1d |
children | 172815da3d41 |
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<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data"> <description>Download a new database</description> <requirements> <requirement type="package" version="0.18.1">gemini</requirement> </requirements> <stdio> <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> <exit_code range="1:" level="fatal" description="Error" /> </stdio> <command interpreter="python"> data_manager_gemini_download.py "$out_file" </command> <inputs> <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/> <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/> </inputs> <outputs> <data name="out_file" format="data_manager_json" label="${tool.name}"/> </outputs> <tests> </tests> <help> This tool downloads the GEMINI databases. For details about this tool, please go to http://gemini.readthedocs.org </help> <citations> <citation type="doi">10.1371/journal.pcbi.1003153</citation> <yield /> </citations> </tool>