Mercurial > repos > iuc > data_manager_gtdbtk_database_installer
annotate test-data/release220/readme.md @ 6:df84aaed4769 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
author | iuc |
---|---|
date | Mon, 09 Sep 2024 09:01:39 +0000 |
parents | |
children |
rev | line source |
---|---|
6
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
1 # Explanation |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
2 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
3 This tar.gz is just a dummy file that mimics the structure of the GTDB-tk releases as shown below and can be used as test case for |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
4 the data manager ! |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
5 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
6 Thanks https://github.com/SantaMcCloud for downloading and providing the structure of all the latest releases ! |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
7 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
8 Folder structur from: https://data.gtdb.ecogenomic.org/releases/release202/202.0/auxillary_files/gtdbtk_r202_data.tar.gz |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
9 :: |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
10 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
11 release202/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
12 ├─msa/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
13 │ ├─gtdb_r202_bac120.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
14 │ └─gtdb_r202_ar122.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
15 ├─masks/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
16 │ ├─gtdb_r202_ar122.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
17 │ └─gtdb_r202_bac120.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
18 ├─metadata/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
19 │ └─metadata.txt |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
20 ├─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
21 │ ├─gtdb_r202_bac120.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
22 │ │ ├─bac120_r202_unroot.pplacer.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
23 │ │ ├─bac120_msa_reps_r202.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
24 │ │ ├─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
25 │ │ ├─fitting_stats.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
26 │ │ └─phylo_model0ghuj7aq.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
27 │ └─gtdb_r202_ar122.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
28 │ ├─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
29 │ ├─fitting_stats.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
30 │ ├─ar122_msa_reps_r202.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
31 │ ├─phylo_modelbf90ubog.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
32 │ └─ar122_r202_unroot.pplacer.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
33 ├─radii/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
34 │ └─gtdb_radii.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
35 ├─fastani/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
36 │ ├─database/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
37 │ │ ├─GCF/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
38 │ │ └─GCA/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
39 │ └─genome_paths.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
40 ├─markers/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
41 │ ├─tigrfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
42 │ │ ├─tigrfam.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
43 │ │ ├─tigrfam.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
44 │ │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
45 │ │ ├─tigrfam.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
46 │ │ ├─tigrfam.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
47 │ │ └─tigrfam.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
48 │ └─pfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
49 │ ├─Pfam-A.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
50 │ ├─generatePfamdat.py |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
51 │ ├─Pfam-A.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
52 │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
53 │ ├─Pfam-A.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
54 │ ├─Pfam-A.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
55 │ ├─Pfam-A.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
56 │ └─Pfam-A.hmm.dat |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
57 ├─manifest.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
58 ├─mrca_red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
59 │ ├─gtdbtk_r202_bac120.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
60 │ └─gtdbtk_r202_ar122.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
61 └─taxonomy/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
62 └─gtdb_taxonomy.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
63 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
64 Folder structur from: https://data.gtdb.ecogenomic.org/releases/release207/207.0/auxillary_files/gtdbtk_r207_data.tar.gz |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
65 :: |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
66 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
67 release207/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
68 ├─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
69 │ ├─gtdb_r207_ar53.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
70 │ │ ├─fitting_stats_merge.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
71 │ │ ├─ar53_msa_reps_r207.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
72 │ │ ├─phylo_model1xblv9t2.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
73 │ │ ├─gtdb_r207_ar53_decorated_fullids_unrooted.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
74 │ │ └─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
75 │ └─gtdb_r207_bac120.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
76 │ ├─bac120_msa_reps_r207.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
77 │ ├─phylo_modeloxtr1_fu.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
78 │ ├─gtdb_r207_bac120_fasttree.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
79 │ ├─gtdb_r207_bac120_decorated_unrooted.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
80 │ └─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
81 ├─temp/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
82 ├─metadata/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
83 │ └─metadata.txt |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
84 ├─masks/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
85 │ ├─gtdb_r207_bac120.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
86 │ └─gtdb_r207_ar53.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
87 ├─msa/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
88 │ ├─gtdb_r207_bac120.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
89 │ └─gtdb_r207_ar53.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
90 ├─mrca_red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
91 │ ├─gtdbtk_r207_bac120.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
92 │ └─gtdbtk_r207_ar53.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
93 ├─split/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
94 │ ├─high/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
95 │ │ ├─red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
96 │ │ └─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
97 │ └─low/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
98 │ ├─tree_mapping.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
99 │ ├─red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
100 │ └─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
101 ├─markers/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
102 │ ├─pfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
103 │ │ ├─Pfam-A.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
104 │ │ ├─Pfam-A.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
105 │ │ ├─generatePfamdat.py |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
106 │ │ ├─Pfam-A.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
107 │ │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
108 │ │ ├─Pfam-A.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
109 │ │ ├─Pfam-A.hmm.dat |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
110 │ │ ├─Pfam-A.hmm.dat.origin |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
111 │ │ └─Pfam-A.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
112 │ └─tigrfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
113 │ ├─tigrfam.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
114 │ ├─tigrfam.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
115 │ ├─tigrfam.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
116 │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
117 │ ├─tigrfam.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
118 │ └─tigrfam.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
119 ├─fastani/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
120 │ ├─database/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
121 │ │ ├─GCA/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
122 │ │ ├─GCF/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
123 │ │ └─gtdb.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
124 │ ├─empty_dir/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
125 │ ├─create_genome_paths.sh |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
126 │ └─genome_paths.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
127 ├─taxonomy/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
128 │ ├─bac120_taxonomy_r207_reps.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
129 │ ├─gtdb_taxonomy.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
130 │ └─ar53_taxonomy_r207_reps.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
131 └─radii/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
132 └─gtdb_radii.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
133 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
134 Folder structur from: https://data.gtdb.ecogenomic.org/releases/release214/214.1/auxillary_files/gtdbtk_r214_data.tar.gz |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
135 :: |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
136 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
137 release214/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
138 ├─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
139 │ ├─gtdb_r214_bac120.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
140 │ │ ├─gtdb_r214_bac120_fasttree.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
141 │ │ ├─phylo_model15qtkqsz.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
142 │ │ ├─gtdb_r214_bac120_decorated_unrooted.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
143 │ │ ├─bac120_msa_r214.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
144 │ │ └─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
145 │ └─gtdb_r214_ar53.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
146 │ ├─ar53_msa_r214.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
147 │ ├─gtdb_r214_ar53_decorated_unrooted.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
148 │ ├─fitting_stats.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
149 │ ├─phylo_model9npj926p.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
150 │ └─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
151 ├─temp/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
152 ├─taxonomy/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
153 │ ├─gtdb_taxonomy.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
154 │ ├─ar53_taxonomy_r214_reps.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
155 │ └─bac120_taxonomy_r214_reps.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
156 ├─mrca_red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
157 │ ├─gtdbtk_r214_ar53.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
158 │ └─gtdbtk_r214_bac120.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
159 ├─split/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
160 │ ├─backbone/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
161 │ │ ├─red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
162 │ │ └─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
163 │ └─class_level/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
164 │ ├─tree_mapping.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
165 │ ├─red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
166 │ └─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
167 ├─msa/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
168 │ ├─gtdb_r214_ar53.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
169 │ └─gtdb_r214_bac120.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
170 ├─radii/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
171 │ └─gtdb_radii.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
172 ├─mash/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
173 ├─markers/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
174 │ ├─pfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
175 │ │ ├─Pfam-A.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
176 │ │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
177 │ │ ├─Pfam-A.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
178 │ │ ├─Pfam-A.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
179 │ │ ├─generatePfamdat.py |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
180 │ │ ├─Pfam-A.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
181 │ │ ├─Pfam-A.hmm.dat.origin |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
182 │ │ ├─Pfam-A.hmm.dat |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
183 │ │ └─Pfam-A.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
184 │ └─tigrfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
185 │ ├─tigrfam.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
186 │ ├─tigrfam.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
187 │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
188 │ ├─tigrfam.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
189 │ ├─tigrfam.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
190 │ └─tigrfam.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
191 ├─metadata/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
192 │ └─metadata.txt |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
193 ├─fastani/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
194 │ ├─database/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
195 │ │ ├─GCF/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
196 │ │ └─GCA/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
197 │ └─genome_paths.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
198 └─masks/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
199 ├─gtdb_r214_bac120.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
200 └─gtdb_r214_ar53.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
201 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
202 Folder structur from: https://data.gtdb.ecogenomic.org/releases/release220/220.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r220_data.tar.gz |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
203 :: |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
204 |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
205 release220/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
206 ├─radii/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
207 │ └─gtdb_radii.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
208 ├─split/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
209 │ ├─class_level/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
210 │ │ ├─tree_mapping.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
211 │ │ ├─red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
212 │ │ └─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
213 │ └─backbone/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
214 │ ├─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
215 │ └─red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
216 ├─taxonomy/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
217 │ ├─ar53_taxonomy_r220_reps.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
218 │ ├─gtdb_taxonomy.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
219 │ └─bac120_taxonomy_r220_reps.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
220 ├─markers/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
221 │ ├─tigrfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
222 │ │ ├─tigrfam.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
223 │ │ ├─tigrfam.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
224 │ │ ├─tigrfam.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
225 │ │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
226 │ │ ├─tigrfam.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
227 │ │ └─tigrfam.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
228 │ └─pfam/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
229 │ ├─Pfam-A.hmm.h3m |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
230 │ ├─Pfam-A.hmm.h3i |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
231 │ ├─Pfam-A.hmm.h3p |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
232 │ ├─Pfam-A.hmm.dat.origin |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
233 │ ├─Pfam-A.hmm.dat |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
234 │ ├─individual_hmms/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
235 │ ├─Pfam-A.hmm.h3f |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
236 │ ├─Pfam-A.hmm |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
237 │ └─generatePfamdat.py |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
238 ├─msa/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
239 │ ├─gtdb_r220_bac120.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
240 │ └─gtdb_r220_ar53.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
241 ├─masks/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
242 │ ├─gtdb_r220_ar53.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
243 │ └─gtdb_r220_bac120.mask |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
244 ├─mrca_red/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
245 │ ├─gtdbtk_r220_ar53.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
246 │ └─gtdbtk_r220_bac120.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
247 ├─skani/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
248 │ ├─database/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
249 │ │ ├─GCF/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
250 │ │ └─GCA/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
251 │ ├─create_genome_paths.sh |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
252 │ └─genome_paths.tsv |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
253 ├─pplacer/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
254 │ ├─gtdb_r220_bac120.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
255 │ │ ├─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
256 │ │ ├─bac120_msa_r220.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
257 │ │ ├─gtdb_r220_bac120_decorated_unrooted.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
258 │ │ ├─gtdb_r220_bac120_fasttree.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
259 │ │ └─phylo_modelw962mykd.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
260 │ └─gtdb_r220_ar53.refpkg/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
261 │ ├─gtdb_r220_ar53_decorated_unrooted.tree |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
262 │ ├─CONTENTS.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
263 │ ├─phylo_model0lt93bak.json |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
264 │ ├─fitting_stats.log |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
265 │ └─ar53_msa_r220.faa |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
266 └─metadata/ |
df84aaed4769
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff
iuc
parents:
diff
changeset
|
267 └─metadata.txt |