Mercurial > repos > iuc > data_manager_gtdbtk_database_installer
comparison data_manager_conf.xml @ 2:6ab422fba1a3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit ad14947c3e13babe90a6878b45608fe56a16150d
| author | iuc |
|---|---|
| date | Tue, 13 Aug 2024 21:13:43 +0000 |
| parents | 629464b96c2e |
| children |
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| 1:2814c058a087 | 2:6ab422fba1a3 |
|---|---|
| 1 <data_managers> | 1 <data_managers> |
| 2 <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer"> | 2 <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer"> |
| 3 <data_table name="gtdbtk_database"> | 3 <data_table name="gtdbtk_database_versioned"> |
| 4 <output> | 4 <output> |
| 5 <column name="value"/> | 5 <column name="value"/> |
| 6 <column name="name"/> | 6 <column name="name"/> |
| 7 <column name="version"/> | |
| 7 <column name="path" output_ref="out_file"> | 8 <column name="path" output_ref="out_file"> |
| 8 <move type="directory" relativize_symlinks="True"> | 9 <move type="directory" relativize_symlinks="True"> |
| 9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database/${value}</target> | 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database_versioned/${value}</target> |
| 10 </move> | 11 </move> |
| 11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database/${value}</value_translation> | 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database_versioned/${value}</value_translation> |
| 13 <value_translation type="function">abspath</value_translation> | |
| 14 </column> | |
| 15 </output> | |
| 16 </data_table> | |
| 17 <data_table name="gtdbtk_database_metadata_versioned"> | |
| 18 <output> | |
| 19 <column name="value"/> | |
| 20 <column name="name"/> | |
| 21 <column name="version"/> | |
| 22 <column name="path" output_ref="out_file"> | |
| 23 <move type="directory" relativize_symlinks="True"> | |
| 24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database_metadata_versioned/${value}</target> | |
| 25 </move> | |
| 26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database_metadata_versioned/${value}</value_translation> | |
| 12 <value_translation type="function">abspath</value_translation> | 27 <value_translation type="function">abspath</value_translation> |
| 13 </column> | 28 </column> |
| 14 </output> | 29 </output> |
| 15 </data_table> | 30 </data_table> |
| 16 </data_manager> | 31 </data_manager> |