diff data_manager/gtdbtk_database_installer.py @ 6:df84aaed4769 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit a7a73e892ade5f3cb5207c411b8ac27b684316ff

--- a/data_manager/gtdbtk_database_installer.py	Thu Sep 05 11:30:01 2024 +0000
+++ b/data_manager/gtdbtk_database_installer.py	Mon Sep 09 09:01:39 2024 +0000
@@ -104,9 +104,6 @@
             # handle the test case for the DB
             return tarball
 
-        fh.extractall(target_directory)
-        fh.close()
-        os.remove(tarball)
         # The tarball extraction will create a directory named
         # something like release202 in the target_directory, so
         # we need to move the items in that directory to the
@@ -133,7 +130,7 @@
         # switch the DB to use the test case
         urls[release][
             "full"
-        ] = "https://data.gtdb.ecogenomic.org/releases/release220/220.0/VERSION.txt"
+        ] = "https://zenodo.org/records/13734217/files/release220-test.tar.gz"
 
         # make use of the test to check if all urls exists
         for _version, items in urls.items():