Mercurial > repos > iuc > data_manager_gtdbtk_database_installer
view data_manager/gtdbtk_database_installer.xml @ 0:629464b96c2e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit 69da0d34ea6e72c0427ec2d3e882c86cbb90833f
author | iuc |
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date | Thu, 08 Dec 2022 19:26:49 +0000 |
parents | |
children | 2814c058a087 |
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<tool id="gtdbtk_database_installer" name="GTDB-Tk Database Installer" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description></description> <macros> <token name="@TOOL_VERSION@">202</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">20.09</token> </macros> <requirements> <requirement type="package" version="3.10.2">python</requirement> </requirements> <command> <![CDATA[ python '$__tool_directory__/gtdbtk_database_installer.py' --database_id '$database_id' --database_name '$database_name' --url '$url' --out_file '$out_file' ]]> </command> <inputs> <param name="database_name" type="text" value="" label="Database name or description" help="This value will be displayed in the GTDB-Tk Database select list"/> <param name="database_id" type="text" value="" label="Database id" help="This value must be unique with nNo whitespace allowed-use underscores"/> <param name="url" type="text" value="https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_data.tar.gz" label="URL for downloading the selected version of the GTDB-Tk database"/> </inputs> <outputs> <data name="out_file" format="data_manager_json"/> </outputs> <tests> <test> <!-- Not actually installing a huge GTDB-Tk database --> <param name="database_id" value="release202"/> <param name="database_name" value="GTDB-Tk database release 202"/> <param name="url" value="https://data.gtdb.ecogenomic.org/releases/release202/202.0/VERSION"/> <output name="out_file"> <assert_contents> <has_text text="GTDB-Tk database release 202"/> <has_text text="release202"/> </assert_contents> </output> </test> </tests> <help> </help> <citations> <citation type="doi">doi.org/10.1038/s41587-020-0501-8</citation> <citation type="doi">dx.doi.org/10.1038/nbt.4229</citation> </citations> </tool>