Mercurial > repos > iuc > data_manager_homer_preparse
annotate tool_data_table_conf.xml.test @ 3:679673fbf0b4 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
| author | iuc | 
|---|---|
| date | Sun, 16 Apr 2023 08:30:23 +0000 | 
| parents | d9c177013aba | 
| children | 
| rev | line source | 
|---|---|
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0
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
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1 <tables> | 
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e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
2 <!-- Locations of preparsed genomes when running tests--> | 
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e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
3 <table name="homer_preparse" comment_char="#"> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
4 <columns>value, dbkey, mask, size, name, path, path_fasta, version</columns> | 
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e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
5 <file path="${__HERE__}/test-data/homer_preparse.loc" /> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
6 </table> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
7 <!-- Locations of all fasta files under genome directory --> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
8 <table name="all_fasta" comment_char="#"> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
9 <columns>value, dbkey, name, path</columns> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
10 <file path="${__HERE__}/test-data/all_fasta.loc" /> | 
| 
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
11 </table> | 
| 
1
 
d9c177013aba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
 
iuc 
parents: 
0 
diff
changeset
 | 
12 <!-- Built-in homer promoter and ID DBs (dir of <env>/share/data, 1 per organism) --> | 
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d9c177013aba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
 
iuc 
parents: 
0 
diff
changeset
 | 
13 <table name="homer_promoters" comment_char="#"> | 
| 
 
d9c177013aba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
 
iuc 
parents: 
0 
diff
changeset
 | 
14 <columns>value, dbkey, organism, path, organism_version, promoter_version</columns> | 
| 
 
d9c177013aba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
 
iuc 
parents: 
0 
diff
changeset
 | 
15 <file path="${__HERE__}/test-data/homer_promoters.loc"/> | 
| 
 
d9c177013aba
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit 16a919905f336e34e237388c1921d0f4f8a368af
 
iuc 
parents: 
0 
diff
changeset
 | 
16 </table> | 
| 
0
 
e6a2110ac3b9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_homer_preparse commit e49d856e0181edc6120220a1b819cba2466a4289"
 
iuc 
parents:  
diff
changeset
 | 
17 </tables> | 
