comparison data_manager/data_manager_humann2_download.xml @ 2:6112a571f012 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit f474a24a52dcda7fb6681869e24f566d28f1e457

1:1316375a8cbb

<tool id="data_manager_humann2_download" name="HUMAnN2 download" version="0.9.9" tool_type="manage_data">
    <description>Download HUMAnN2 database</description>
    <requirements>
        <requirement type="package" version="0.9.9">humann2</requirement>
    </requirements>
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>

            <when value="uniref">
                <param name="build" type="select" label="Build for protein database">
                    <option value="uniref50_diamond">Full UniRef50</option>
                    <option value="uniref50_ec_filtered_diamond">EC-filtered UniRef50</option>
                    <option value="uniref50_GO_filtered_rapsearch2">GO filtered UniRef50 for rapsearch2</option>
                    <option value="uniref90_diamond" selected="true">Full UniRef50</option>
                    <option value="uniref90_ec_filtered_diamond">EC-filtered UniRef90</option>
                    <option value="DEMO_diamond">Demo</option>
                </param>
            </when>
        </conditional>

2:6112a571f012

<tool id="data_manager_humann2_download" name="HUMAnN2 download" version="@VERSION@.0" tool_type="manage_data">
    <description>Download HUMAnN2 database</description>
    <macros>
        <token name="@VERSION@">0.9.9</token>
    </macros>
    <requirements>
        <requirement type="package" version="@VERSION@">humann2</requirement>
    </requirements>
    <stdio>
        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
        <exit_code range="1:"  level="fatal" description="Error" />
    </stdio>

            <when value="uniref">
                <param name="build" type="select" label="Build for protein database">
                    <option value="uniref50_diamond">Full UniRef50</option>
                    <option value="uniref50_ec_filtered_diamond">EC-filtered UniRef50</option>
                    <option value="uniref50_GO_filtered_rapsearch2">GO filtered UniRef50 for rapsearch2</option>
                    <option value="uniref90_diamond" selected="true">Full UniRef90</option>
                    <option value="uniref90_ec_filtered_diamond">EC-filtered UniRef90</option>
                    <option value="DEMO_diamond">Demo</option>
                </param>
            </when>
        </conditional>