Mercurial > repos > iuc > data_manager_humann_database_downloader
diff data_manager_conf.xml @ 0:60eb2512c5a0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_humann_database_downloader commit 077b8f34e081e6c427acb0fde0fbb97d1b241e0b"
| author | iuc |
|---|---|
| date | Wed, 12 May 2021 08:58:50 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Wed May 12 08:58:50 2021 +0000 @@ -0,0 +1,47 @@ +<data_managers> + <data_manager tool_file="data_manager/data_manager_humann_download.xml" id="data_manager_humann_download" > + <data_table name="humann_nucleotide_database"> <!-- Defines a Data Table to be modified. --> + <output> <!-- Handle the output of the Data Manager Tool --> + <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="path" output_ref="out_file" > + <move type="directory"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann/data/nucleotide_database/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann/data/nucleotide_database/${value}</value_translation> + </column> + </output> + </data_table> + <data_table name="humann_protein_database"> <!-- Defines a Data Table to be modified. --> + <output> <!-- Handle the output of the Data Manager Tool --> + <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="path" output_ref="out_file" > + <move type="directory"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann/data/protein_database/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann/data/protein_database/${value}</value_translation> + </column> + </output> + </data_table> + <data_table name="humann_utility_mapping"> <!-- Defines a Data Table to be modified. --> + <output> <!-- Handle the output of the Data Manager Tool --> + <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> + <column name="path" output_ref="out_file" > + <move type="file" relativize_symlinks="False"> + <source>${path}</source> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">humann/data/utility_mapping/${value}</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/humann/data/utility_mapping/${value}</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers> +