Mercurial > repos > iuc > data_manager_mapseq
comparison readme.md @ 0:dbf2735e8480 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/ commit 66e797aaa79b92c282a8127260cdfd5702207e35
| author | iuc |
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| date | Wed, 13 Sep 2023 19:54:19 +0000 |
| parents | |
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comparison
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| -1:000000000000 | 0:dbf2735e8480 |
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| 1 # test data explained | |
| 2 | |
| 3 ## the tool will expect one file each with the corresponing endings in the DB folder | |
| 4 | |
| 5 Trimmed version of: | |
| 6 * OTU table (id for each taxon) (*.otu) | |
| 7 * Ref. fasta DB (*.fasta) | |
| 8 * Taxan assignemnt of each ref. DB sequence (*.txt) | |
| 9 * clustering of the ref. sequences (starting with 0) corresponding to the ref. sequences (*.mscluster) | |
| 10 | |
| 11 ## Command to get DBs | |
| 12 | |
| 13 ``` | |
| 14 wget ftp://ftp.ebi.ac.uk/pub/databases/metagenomics/pipeline-5.0/ref-dbs/silva_lsu-20200130.tar.gz | |
| 15 mkdir temp | |
| 16 tar xvzf silva_ssu-20200130.tar.gz -C temp | |
| 17 mv temp/* silva_ssu-20200130 | |
| 18 ``` |