diff data_manager_fetch_mapseq_db.py @ 1:4cd97cc67061 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/ commit 373300c0508fc239fa6d1c8a0351fa9cbb9c0426

--- a/data_manager_fetch_mapseq_db.py	Wed Sep 13 19:54:19 2023 +0000
+++ b/data_manager_fetch_mapseq_db.py	Sat Mar 23 07:20:14 2024 +0000
@@ -20,8 +20,8 @@
 DB_names = {
     "mgnify_lsu": "MGnify LSU (v5.0.7) - silva_lsu-20200130",
     "mgnify_ssu": "MGnify SSU (v5.0.7) - silva_ssu-20200130",
-    "mgnify_its_unite": "MGnify ITS ITSonedb (v5.0.7) - ITSoneDB-20200214",
-    "mgnify_its_itsonedb": "MGnify ITS UNITE (v5.0.7) - UNITE-20200214",
+    "mgnify_its_unite": "MGnify ITS UNITE (v5.0.7) - UNITE-20200214",
+    "mgnify_its_itsonedb": "MGnify ITS ITSonedb (v5.0.7) - ITSoneDB-20200214",
     "test_lsu": "Trimmed LSU Test DB",
 }
 
@@ -29,7 +29,7 @@
 def download_untar_store(url, tmp_path, dest_path):
     """
     Download a tar.gz file containing one folder,
-    extract that folder and move the content inside dest_path 
+    extract that folder and move the content inside dest_path
     """
 
     extract_path = os.path.join(tmp_path, "extract")
@@ -51,7 +51,7 @@
             print(f"Copy data to {dest_path}")
             shutil.copytree(folder_path, dest_path)
             print("Done !")
-    
+
     shutil.rmtree(tmp_path)
 
 
@@ -88,7 +88,7 @@
     tmp_path = os.path.join(workdir, "tmp")
 
     # create DB
-    if args.test:  
+    if args.test:
         url = DB_paths["test_lsu"]
     else:
         url = DB_paths[args.db_type]