Mercurial > repos > iuc > data_manager_mapseq
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/ commit 373300c0508fc239fa6d1c8a0351fa9cbb9c0426
author | iuc |
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date | Sat, 23 Mar 2024 07:20:14 +0000 |
parents | dbf2735e8480 |
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# test data explained ## the tool will expect one file each with the corresponing endings in the DB folder Trimmed version of: * OTU table (id for each taxon) (*.otu) * Ref. fasta DB (*.fasta) * Taxan assignemnt of each ref. DB sequence (*.txt) * clustering of the ref. sequences (starting with 0) corresponding to the ref. sequences (*.mscluster) ## Command to get DBs ``` wget ftp://ftp.ebi.ac.uk/pub/databases/metagenomics/pipeline-5.0/ref-dbs/silva_lsu-20200130.tar.gz mkdir temp tar xvzf silva_ssu-20200130.tar.gz -C temp mv temp/* silva_ssu-20200130 ```