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planemo upload for repository https://github.com/galaxyproject/tools-iuc/ commit 373300c0508fc239fa6d1c8a0351fa9cbb9c0426
author iuc
date Sat, 23 Mar 2024 07:20:14 +0000
parents dbf2735e8480
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# test data explained

## the tool will expect one file each with the corresponing endings in the DB folder

Trimmed version of: 
* OTU table (id for each taxon) (*.otu)
* Ref. fasta DB (*.fasta)
* Taxan assignemnt of each ref. DB sequence (*.txt)
* clustering of the ref. sequences (starting with 0) corresponding to the ref. sequences (*.mscluster)

## Command to get DBs

```
wget ftp://ftp.ebi.ac.uk/pub/databases/metagenomics/pipeline-5.0/ref-dbs/silva_lsu-20200130.tar.gz
mkdir temp
tar xvzf silva_ssu-20200130.tar.gz -C temp
mv temp/* silva_ssu-20200130
```