Mercurial > repos > iuc > data_manager_mapseq
changeset 1:4cd97cc67061 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/ commit 373300c0508fc239fa6d1c8a0351fa9cbb9c0426
| author | iuc |
|---|---|
| date | Sat, 23 Mar 2024 07:20:14 +0000 |
| parents | dbf2735e8480 |
| children | 23511530b8fd |
| files | data_manager_fetch_mapseq_db.py macros.xml |
| diffstat | 2 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/data_manager_fetch_mapseq_db.py Wed Sep 13 19:54:19 2023 +0000 +++ b/data_manager_fetch_mapseq_db.py Sat Mar 23 07:20:14 2024 +0000 @@ -20,8 +20,8 @@ DB_names = { "mgnify_lsu": "MGnify LSU (v5.0.7) - silva_lsu-20200130", "mgnify_ssu": "MGnify SSU (v5.0.7) - silva_ssu-20200130", - "mgnify_its_unite": "MGnify ITS ITSonedb (v5.0.7) - ITSoneDB-20200214", - "mgnify_its_itsonedb": "MGnify ITS UNITE (v5.0.7) - UNITE-20200214", + "mgnify_its_unite": "MGnify ITS UNITE (v5.0.7) - UNITE-20200214", + "mgnify_its_itsonedb": "MGnify ITS ITSonedb (v5.0.7) - ITSoneDB-20200214", "test_lsu": "Trimmed LSU Test DB", } @@ -29,7 +29,7 @@ def download_untar_store(url, tmp_path, dest_path): """ Download a tar.gz file containing one folder, - extract that folder and move the content inside dest_path + extract that folder and move the content inside dest_path """ extract_path = os.path.join(tmp_path, "extract") @@ -51,7 +51,7 @@ print(f"Copy data to {dest_path}") shutil.copytree(folder_path, dest_path) print("Done !") - + shutil.rmtree(tmp_path) @@ -88,7 +88,7 @@ tmp_path = os.path.join(workdir, "tmp") # create DB - if args.test: + if args.test: url = DB_paths["test_lsu"] else: url = DB_paths[args.db_type]
--- a/macros.xml Wed Sep 13 19:54:19 2023 +0000 +++ b/macros.xml Sat Mar 23 07:20:14 2024 +0000 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">1.0</token> + <token name="@TOOL_VERSION@">1.1</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">22.05</token> <xml name="requirements">