Mercurial > repos > iuc > data_manager_mash_sketch_builder
annotate data_manager/mash_sketch_builder.py @ 3:7197573e88b9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author | iuc |
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date | Sun, 16 Apr 2023 08:30:43 +0000 |
parents | ce1d5c8d5bff |
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rev | line source |
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0
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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1 #!/usr/bin/env python |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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2 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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3 import argparse |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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4 import errno |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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5 import json |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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6 import os |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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7 import subprocess |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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8 import uuid |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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9 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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10 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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11 DATA_TABLE_NAME = "mash_sketches" |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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12 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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13 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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14 def mash_sketch(mash_sketch_args, sketch_name, target_directory, data_table_name=DATA_TABLE_NAME): |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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15 UUID = str(uuid.uuid4()) |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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16 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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17 os.mkdir(os.path.join(target_directory, UUID)) |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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18 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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19 sketch_path = os.path.join(target_directory, UUID, "sketch") |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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20 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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21 args = [ |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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22 '-k', str(mash_sketch_args["kmer_size"]), |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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23 '-s', str(mash_sketch_args["sketch_size"]), |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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24 '-w', str(mash_sketch_args["probability_threshold"]), |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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25 '-o', str(sketch_path), |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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26 '-p', str(mash_sketch_args["threads"]), |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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27 str(mash_sketch_args["fasta"]), |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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28 ] |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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29 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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30 if mash_sketch_args["individual_sequences"]: |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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31 args = args + ["-i"] |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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32 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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33 subprocess.check_call(['mash', 'sketch'] + args, cwd=target_directory) |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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34 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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35 data_table_entry = { |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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36 'data_tables': { |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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37 data_table_name: [ |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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38 { |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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39 "value": UUID, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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40 "name": sketch_name, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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41 "path": UUID, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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42 } |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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43 ] |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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44 } |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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45 } |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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46 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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47 return data_table_entry |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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48 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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49 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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50 def main(): |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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51 parser = argparse.ArgumentParser() |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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52 parser.add_argument('data_manager_json') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
parents:
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53 parser.add_argument('--kmer-size', dest='kmer_size', type=int, default=35, help='kmer length') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
parents:
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54 parser.add_argument('--sketch-size', dest='sketch_size', type=int, default=31, help='minimizer length') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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55 parser.add_argument('--probability-threshold', dest='probability_threshold', type=float, default=0.01, help='Probability threshold for warning about low k-mer size') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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56 parser.add_argument('--individual-sequences', dest='individual_sequences', action='store_true', default=False, help='Sketch individual sequences (for multi-fasta files)') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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57 parser.add_argument('--fasta', dest='fasta', help='Fasta file to sketch') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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58 parser.add_argument('--threads', dest='threads', default=1, help='threads') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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59 parser.add_argument('--sketch-name', dest='sketch_name', help='Name for sketch') |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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60 args = parser.parse_args() |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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61 |
2
ce1d5c8d5bff
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
iuc
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62 with open(args.data_manager_json) as fh: |
ce1d5c8d5bff
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
iuc
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63 data_manager_input = json.load(fh) |
0
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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64 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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65 target_directory = data_manager_input['output_data'][0]['extra_files_path'] |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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66 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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67 try: |
1
b6016642539d
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 848c47fb29e9f1d319056a94a7dbd90129a4aafc"
iuc
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68 os.mkdir(target_directory) |
0
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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69 except OSError as exc: |
1
b6016642539d
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 848c47fb29e9f1d319056a94a7dbd90129a4aafc"
iuc
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70 if exc.errno == errno.EEXIST and os.path.isdir(target_directory): |
0
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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71 pass |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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72 else: |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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73 raise |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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74 |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
iuc
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75 data_manager_output = {} |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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76 |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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77 mash_sketch_args = { |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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78 "kmer_size": args.kmer_size, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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79 "sketch_size": args.sketch_size, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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80 "probability_threshold": args.probability_threshold, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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81 "fasta": args.fasta, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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82 "individual_sequences": args.individual_sequences, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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83 "threads": args.threads, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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84 } |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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85 |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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86 data_manager_output = mash_sketch( |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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87 mash_sketch_args, |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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88 args.sketch_name, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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89 target_directory, |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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90 ) |
2af9137ba067
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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91 |
2
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
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92 with open(args.data_manager_json, 'w') as fh: |
ce1d5c8d5bff
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
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93 json.dump(data_manager_output, fh, sort_keys=True) |
0
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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94 |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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95 |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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96 if __name__ == "__main__": |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit c6efcbece52dec310253537b35419839746fff7f"
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97 main() |