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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:51:11 +0000
parents 9c4ad82be5bd
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager/data_manager_metaphlan2_download.xml" id="data_manager_metaphlan2_download" >
        <data_table name="metaphlan2_database">  <!-- Defines a Data Table to be modified. -->
            <output> <!-- Handle the output of the Data Manager Tool -->
                <column name="value" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                <column name="path" output_ref="out_file" >
                    <move type="directory">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan2/data/${dbkey}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan2/data/${dbkey}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>