Mercurial > repos > iuc > data_manager_metaphlan2_database_downloader
changeset 1:83f07f40b200 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
| author | iuc |
|---|---|
| date | Sun, 22 Nov 2020 12:51:11 +0000 |
| parents | 9c4ad82be5bd |
| children | |
| files | data_manager/data_manager_metaphlan2_download.py |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/data_manager/data_manager_metaphlan2_download.py Sat Mar 04 12:11:20 2017 -0500 +++ b/data_manager/data_manager_metaphlan2_download.py Sun Nov 22 12:51:11 2020 +0000 @@ -24,7 +24,8 @@ to create it if necessary. """ - params = json.loads(open(jsonfile).read()) + with open(jsonfile) as fh: + params = json.load(fh) return (params['param_dict'], params['output_data'][0]['extra_files_path']) @@ -36,7 +37,7 @@ # >>> add_data_table(d,'my_data') # >>> add_data_table_entry(dict(dbkey='hg19',value='human')) # >>> add_data_table_entry(dict(dbkey='mm9',value='mouse')) -# >>> print str(json.dumps(d)) +# >>> print(json.dumps(d)) def create_data_tables_dict(): """Return a dictionary for storing data table information @@ -144,7 +145,6 @@ # Write output JSON print("Outputting JSON") - print(str(json.dumps(data_tables))) - with open(jsonfile, 'wb') as out: - out.write(json.dumps(data_tables)) + with open(jsonfile, 'w') as fh: + json.dump(data_tables, fh, sort_keys=True) print("Done.")