Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
annotate data_manager_conf.xml @ 0:169b08c9713c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
author | iuc |
---|---|
date | Mon, 19 Apr 2021 20:54:06 +0000 |
parents | |
children | 5fe20c915fa6 |
rev | line source |
---|---|
0
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
2 <data_managers> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
3 <data_manager tool_file="data_manager/data_manager_metaphlan_download.xml" id="data_manager_metaphlan_download" > |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
4 <data_table name="metaphlan_database"> <!-- Defines a Data Table to be modified. --> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
5 <output> <!-- Handle the output of the Data Manager Tool --> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
9 <column name="path" output_ref="out_file" > |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
10 <move type="directory"> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
11 <source>${path}</source> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan/data/${dbkey}</target> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
13 </move> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan/data/${dbkey}</value_translation> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
15 <value_translation type="function">abspath</value_translation> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
16 </column> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
17 </output> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
18 </data_table> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
19 </data_manager> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
20 </data_managers> |
169b08c9713c
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 1e543a44ceffd8e4c5537b9015606ab3b90a114c"
iuc
parents:
diff
changeset
|
21 |