Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
comparison data_manager/data_manager_metaphlan_download.xml @ 3:4ba60cb14cb0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit f5c02de49bb33445667dd359bc7ce5801140b207
author | iuc |
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date | Wed, 05 Apr 2023 15:01:49 +0000 |
parents | 5fe20c915fa6 |
children | 0cb27ea69dc1 |
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2:5fe20c915fa6 | 3:4ba60cb14cb0 |
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3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> | 4 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> |
5 </requirements> | 5 </requirements> |
6 <macros> | 6 <macros> |
7 <token name="@TOOL_VERSION@">4.0.6</token> | 7 <token name="@TOOL_VERSION@">4.0.6</token> |
8 <token name="@VERSION_SUFFIX@">0</token> | 8 <token name="@VERSION_SUFFIX@">1</token> |
9 </macros> | 9 </macros> |
10 <stdio> | 10 <stdio> |
11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> | 11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> |
12 <exit_code range="1:" level="fatal" description="Error"/> | 12 <exit_code range="1:" level="fatal" description="Error"/> |
13 </stdio> | 13 </stdio> |
16 --index '$index' | 16 --index '$index' |
17 --json '$out_file' | 17 --json '$out_file' |
18 ]]></command> | 18 ]]></command> |
19 <inputs> | 19 <inputs> |
20 <param name="index" type="select" label="Version"> | 20 <param name="index" type="select" label="Version"> |
21 <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">mpa_vOct22_CHOCOPhlAnSGB_202212</option> | 21 <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">FULL: mpa_vOct22_CHOCOPhlAnSGB_202212</option> |
22 <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">mpa_vJan21_CHOCOPhlAnSGB_202103</option> | 22 <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">FULL: mpa_vJan21_CHOCOPhlAnSGB_202103</option> |
23 <option value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103">DEMO: mpa_vJan21_TOY_CHOCOPhlAnSGB_202103</option> | |
23 </param> | 24 </param> |
24 </inputs> | 25 </inputs> |
25 <outputs> | 26 <outputs> |
26 <data name="out_file" format="data_manager_json" label="${tool.name}"/> | 27 <data name="out_file" format="data_manager_json" label="${tool.name}"/> |
27 </outputs> | 28 </outputs> |
28 <tests> | 29 <tests> |
29 <!-- | |
30 <test expect_num_outputs="1"> | 30 <test expect_num_outputs="1"> |
31 <param name="index" value="mpa_vOct22_CHOCOPhlAnSGB_202212"/> | 31 <param name="index" value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103"/> |
32 <output name="out_file"> | 32 <output name="out_file"> |
33 <assert_contents> | 33 <assert_contents> |
34 <has_text text="mpa_vOct22_CHOCOPhlAnSGB_202212"/> | 34 <has_text text="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103"/> |
35 <has_text text="MetaPhlAn clade-specific marker genes (mpa_vOct22_CHOCOPhlAnSGB_202212)"/> | 35 <has_text text="MetaPhlAn clade-specific marker genes (mpa_vJan21_TOY_CHOCOPhlAnSGB_202103)"/> |
36 </assert_contents> | 36 </assert_contents> |
37 </output> | 37 </output> |
38 </test> | 38 </test> |
39 --> | |
40 </tests> | 39 </tests> |
41 <help><![CDATA[ | 40 <help><![CDATA[ |
42 This tool downloads and builds the MetaPhlAn databases. | 41 This tool downloads and builds the MetaPhlAn databases. |
43 ]]></help> | 42 ]]></help> |
44 <citations> | 43 <citations> |