Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
comparison data_manager_conf.xml @ 2:5fe20c915fa6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 57df6e8a0ffd145e560f7c7e20cfedbbe2ce01d2
author | iuc |
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date | Tue, 28 Mar 2023 18:54:12 +0000 |
parents | 169b08c9713c |
children |
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1:9c43baa60906 | 2:5fe20c915fa6 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <data_managers> | 2 <data_managers> |
3 <data_manager tool_file="data_manager/data_manager_metaphlan_download.xml" id="data_manager_metaphlan_download" > | 3 <data_manager tool_file="data_manager/data_manager_metaphlan_download.xml" id="data_manager_metaphlan_download"> |
4 <data_table name="metaphlan_database"> <!-- Defines a Data Table to be modified. --> | 4 <data_table name="metaphlan_database_versioned"> <!-- Defines a Data Table to be modified. --> |
5 <output> <!-- Handle the output of the Data Manager Tool --> | 5 <output> <!-- Handle the output of the Data Manager Tool --> |
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | 6 <column name="value"/> <!-- columns that are going to be specified by the Data Manager Tool --> |
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> | 7 <column name="name"/> <!-- columns that are going to be specified by the Data Manager Tool --> |
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> | 8 <column name="dbkey"/> <!-- columns that are going to be specified by the Data Manager Tool --> |
9 <column name="path" output_ref="out_file" > | 9 <column name="path" output_ref="out_file"> |
10 <move type="directory"> | 10 <move type="directory"> |
11 <source>${path}</source> | 11 <source>${path}</source> |
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan/data/${dbkey}</target> | 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan/data/${dbkey}</target> |
13 </move> | 13 </move> |
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan/data/${dbkey}</value_translation> | 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan/data/${dbkey}</value_translation> |
15 <value_translation type="function">abspath</value_translation> | 15 <value_translation type="function">abspath</value_translation> |
16 </column> | 16 </column> |
17 <column name="db_version"/> <!-- columns that are going to be specified by the Data Manager Tool --> | |
17 </output> | 18 </output> |
18 </data_table> | 19 </data_table> |
19 </data_manager> | 20 </data_manager> |
20 </data_managers> | 21 </data_managers> |
21 | 22 |