Mercurial > repos > iuc > data_manager_metaphlan_database_downloader
comparison data_manager/data_manager_metaphlan_download.xml @ 5:a88f077f1994 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit fb1e5bdec7481b275ef62d4dc88b00b0dbb36350
author | iuc |
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date | Fri, 14 Jun 2024 21:14:55 +0000 |
parents | 0cb27ea69dc1 |
children |
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4:0cb27ea69dc1 | 5:a88f077f1994 |
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1 <tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="22.05"> | 1 <tool id="data_manager_metaphlan_download" name="Download and build MetaPhlAn database" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="22.05"> |
2 <description></description> | 2 <description></description> |
3 <macros> | |
4 <token name="@TOOL_VERSION@">4.0.6</token> | |
5 <token name="@VERSION_SUFFIX@">3</token> | |
6 </macros> | |
3 <requirements> | 7 <requirements> |
4 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> | 8 <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement> |
5 </requirements> | 9 </requirements> |
6 <macros> | |
7 <token name="@TOOL_VERSION@">4.0.6</token> | |
8 <token name="@VERSION_SUFFIX@">2</token> | |
9 </macros> | |
10 <stdio> | 10 <stdio> |
11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> | 11 <exit_code range=":-1" level="fatal" description="Error: Cannot open file"/> |
12 <exit_code range="1:" level="fatal" description="Error"/> | 12 <exit_code range="1:" level="fatal" description="Error"/> |
13 </stdio> | 13 </stdio> |
14 <command><![CDATA[ | 14 <command><![CDATA[ |
16 --index '$index' | 16 --index '$index' |
17 --json '$out_file' | 17 --json '$out_file' |
18 ]]></command> | 18 ]]></command> |
19 <inputs> | 19 <inputs> |
20 <param name="index" type="select" label="Version"> | 20 <param name="index" type="select" label="Version"> |
21 <option value="mpa_vOct22_CHOCOPhlAnSGB_202403" selected="true">FULL: mpa_vOct22_CHOCOPhlAnSGB_202403</option> | |
22 <option value="mpa_vJun23_CHOCOPhlAnSGB_202403" selected="true">FULL: mpa_vJun23_CHOCOPhlAnSGB_202403</option> | |
23 <option value="mpa_vJun23_CHOCOPhlAnSGB_202307" selected="true">FULL: mpa_vJun23_CHOCOPhlAnSGB_202307</option> | |
21 <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">FULL: mpa_vOct22_CHOCOPhlAnSGB_202212</option> | 24 <option value="mpa_vOct22_CHOCOPhlAnSGB_202212" selected="true">FULL: mpa_vOct22_CHOCOPhlAnSGB_202212</option> |
22 <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">FULL: mpa_vJan21_CHOCOPhlAnSGB_202103</option> | 25 <option value="mpa_vJan21_CHOCOPhlAnSGB_202103">FULL: mpa_vJan21_CHOCOPhlAnSGB_202103</option> |
23 <option value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103">DEMO: mpa_vJan21_TOY_CHOCOPhlAnSGB_202103</option> | 26 <option value="mpa_vJan21_TOY_CHOCOPhlAnSGB_202103">DEMO: mpa_vJan21_TOY_CHOCOPhlAnSGB_202103</option> |
24 </param> | 27 </param> |
25 </inputs> | 28 </inputs> |