annotate tool-data/mmseqs2_databases.loc.sample @ 2:35885ec2e59b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 611b90f1628037f05d85905c88629a422d0a2053
author iuc
date Mon, 14 Apr 2025 18:39:14 +0000
parents 561c4b181bfa
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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75cc3fb4c10f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 1400593429eb4e9c6e307df3621825a8b84a6fa7
iuc
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1 #This is a sample file distributed with Galaxy that enables tools
75cc3fb4c10f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 1400593429eb4e9c6e307df3621825a8b84a6fa7
iuc
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2 #to use a directory of metagenomics files.
75cc3fb4c10f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 1400593429eb4e9c6e307df3621825a8b84a6fa7
iuc
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3 #file has this format (white space characters are TAB characters)
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561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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4 # Tab separated with 6 columns:
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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5 # value : unique value used to generate the database path
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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6 # name: name of the database generate using the date and version of the mmseqs2 databases
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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7 # type : type of the database (aminoacid, nucleotide...)
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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8 # taxonomy : whether or not the database should contain taxonomy information
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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9 # path : final path to mmseqs2 databases on galaxy
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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10 # version : tool version to filter database version depending of the tool
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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11 # value, name, type, taxonomy, path, version
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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12 # eg.
561c4b181bfa planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mmseqs2_database commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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13 #SILVA-15.6f452-10022025 SILVA 10022025 nucleotide yes /path/to/data 15.6f452