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view data_manager_conf.xml @ 1:aec831b54a5b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 15:47:32 -0500
parents ab7a7e798c34
children
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<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager/data_manager_fetch_mothur_reference_data.xml" id="data_manager_mothur_fetch_reference_data">
    <data_table name="mothur_aligndb">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/aligndb/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/aligndb/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="mothur_lookup">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/lookup/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/lookup/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="mothur_map">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/map/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/map/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
    <data_table name="mothur_taxonomy">
      <output>
        <column name="name" />
        <column name="value" output_ref="out_file" >
          <move type="file">
            <source>${value}</source>
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mothur/taxonomy/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mothur/taxonomy/${value}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
</data_managers>