Mercurial > repos > iuc > data_manager_ncbi_taxonomy_sqlite
comparison data_manager/data_manager_ncbi_taxonomy_sqlite.py @ 1:54a0869d0051 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_ncbi_taxonomy_sqlite/ commit 0e29890e924b85f063c1dfe12707b309b3afd074"
| author | iuc |
|---|---|
| date | Wed, 22 Jul 2020 11:54:58 -0400 |
| parents | 7a76cd412252 |
| children | 37560eebb5ce |
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| 0:7a76cd412252 | 1:54a0869d0051 |
|---|---|
| 70 data_manager_dict["data_tables"] = data_manager_dict.get("data_tables", {}) | 70 data_manager_dict["data_tables"] = data_manager_dict.get("data_tables", {}) |
| 71 data_manager_dict["data_tables"][DATA_TABLE_NAME] = data_manager_dict[ | 71 data_manager_dict["data_tables"][DATA_TABLE_NAME] = data_manager_dict[ |
| 72 "data_tables" | 72 "data_tables" |
| 73 ].get(DATA_TABLE_NAME, []) | 73 ].get(DATA_TABLE_NAME, []) |
| 74 | 74 |
| 75 data = build_sqlite(args.taxonomy_dir, args.output_directory, args.name, args.description) | 75 data = build_sqlite(args.taxonomy_dir, output_directory, args.name, args.description) |
| 76 | 76 |
| 77 data_manager_dict["data_tables"][DATA_TABLE_NAME].extend(data) | 77 data_manager_dict["data_tables"][DATA_TABLE_NAME].extend(data) |
| 78 print(json.dumps(data_manager_dict)) | 78 print(json.dumps(data_manager_dict)) |
| 79 json.dump(data_manager_dict, open(args.galaxy_datamanager_filename, "w")) | 79 json.dump(data_manager_dict, open(args.galaxy_datamanager_filename, "w")) |