# HG changeset patch # User iuc # Date 1659800644 0 # Node ID c8b67693199e21d0a6910e920b688f9d8a796c6c # Parent 4de9e77bcc9e65b29e5dd163b6f056768dc76759 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_nextclade commit 0617f25cbfdca61240f16b85ae21f3cd46b1a44e diff -r 4de9e77bcc9e -r c8b67693199e test-data/nextclade.loc --- a/test-data/nextclade.loc Sat Jul 30 08:09:42 2022 +0000 +++ b/test-data/nextclade.loc Sat Aug 06 15:44:04 2022 +0000 @@ -1,10 +1,12 @@ # this is a tab separated file describing the location of nextclade databases used for the -# pangolin SARS-CoV-2 lineage typing tool +# nextclade viral lineage typing tool # # the columns are: # value database_name description min_nextclade_version date path # -# min_pangolin_version is the minimum pangolin tool major version that is needed to read the pangolin_data +# min_nextclade_version is the minimum nextclade tool major version that is needed to read the nextclade data +# +# the database_name refers to which dataset names that, in general, align with species names. for more details see the output of "nextclade dataset list" # # for example #sars-cov-2_2022-06-14T12:00:00Z sars-cov-2 SARS-CoV-2 1.10.0 2022-06-14T12:00:00 /srv/galaxy/tool-data/nextclade/sars-cov-2_2022-06-14T12-00-00Z diff -r 4de9e77bcc9e -r c8b67693199e tool-data/nextclade.loc --- a/tool-data/nextclade.loc Sat Jul 30 08:09:42 2022 +0000 +++ b/tool-data/nextclade.loc Sat Aug 06 15:44:04 2022 +0000 @@ -1,10 +1,12 @@ -# this is a tab separated file describing the location of pangolin_data databases used for the -# pangolin SARS-CoV-2 lineage typing tool +# this is a tab separated file describing the location of nextclade databases used for the +# nextclade viral lineage typing tool # # the columns are: # value database_name description min_nextclade_version date path # -# min_pangolin_version is the minimum pangolin tool major version that is needed to read the pangolin_data +# min_nextclade_version is the minimum nextclade tool major version that is needed to read the nextclade data +# +# the database_name refers to which dataset names that, in general, align with species names. for more details see the output of "nextclade dataset list" # # for example #sars-cov-2_2022-06-14T12:00:00Z sars-cov-2 SARS-CoV-2 1.10.0 2022-06-14T12:00:00 /srv/galaxy/tool-data/nextclade/sars-cov-2_2022-06-14T12-00-00Z