Mercurial > repos > iuc > data_manager_omamer
comparison data_manager/omamer.xml @ 1:57db282ca204 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_omamer commit 67067cd7917545904b3a9980948abdd19f0576bd
| author | iuc |
|---|---|
| date | Thu, 07 Mar 2024 14:28:42 +0000 |
| parents | e1502e4f8725 |
| children | f8d72275878e |
comparison
equal
deleted
inserted
replaced
| 0:e1502e4f8725 | 1:57db282ca204 |
|---|---|
| 1 <tool id="data_manager_omamer" name="OMAmer data manager" version="2.0.2" tool_type="manage_data" profile="20.01"> | 1 <tool id="data_manager_omamer" name="OMAmer data manager" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01"> |
| 2 <macros> | 2 <macros> |
| 3 <import>macros.xml</import> | 3 <import>macros.xml</import> |
| 4 </macros> | 4 </macros> |
| 5 <version_command></version_command> | 5 <version_command></version_command> |
| 6 <command detect_errors="exit_code"><![CDATA[ | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 python '$__tool_directory__/omamer.py' | 7 python '$__tool_directory__/omamer.py' |
| 8 --name '$name' | 8 --name '$name' |
| 9 --json '$output_file' | 9 --json '$output_file' |
| 10 --version '@TOOL_VERSION@' | |
| 10 ]]></command> | 11 ]]></command> |
| 11 <inputs> | 12 <inputs> |
| 12 <param name="output_dir" type="text" label="Output Directory" value=""/> | 13 <param name="output_dir" type="text" label="Output Directory" value=""/> |
| 13 <param name="name" type="select" label="Database"> | 14 <param name="name" type="select" label="Database"> |
| 14 <option value="Primates">Primates</option> | 15 <option value="Primates">Primates</option> |
| 15 <option value="Viridiplantae">Viridiplantae</option> | 16 <option value="Viridiplantae">Viridiplantae</option> |
| 16 <option value="Metazoa">Metazoa</option> | 17 <option value="Metazoa">Metazoa</option> |
| 17 <option value="LUCA">LUCA</option> | 18 <option value="LUCA">LUCA</option> |
| 18 </param> | 19 </param> |
| 19 </inputs> | 20 </inputs> |
| 20 | 21 |
| 21 <outputs> | 22 <outputs> |
| 22 <data name="output_file" format="data_manager_json" label="OMAmer data manager: JSON"/> | 23 <data name="output_file" format="data_manager_json" label="OMAmer data manager: JSON"/> |
| 23 </outputs> | 24 </outputs> |
| 24 | 25 |
| 25 <tests> | 26 <tests> |
| 26 <test> | 27 <test> |
| 27 <param name="output_dir" value="test_galaxy"/> | 28 <param name="output_dir" value="test_galaxy"/> |
| 28 <param name="name" value="Primates"/> | 29 <param name="name" value="Primates"/> |
| 29 <output name="output_file"> | 30 <output name="output_file" file="out.json"/> |
| 30 <assert_contents> | |
| 31 <has_text text="Primates-v2.0"/> | |
| 32 <has_text text="database_omamer"/> | |
| 33 </assert_contents> | |
| 34 </output> | |
| 35 </test> | 31 </test> |
| 36 </tests> | 32 </tests> |
| 37 | 33 |
| 38 <help><![CDATA[ | 34 <help><![CDATA[ |
| 39 This data manager retrieves data from various pre-built databases. | 35 This data manager retrieves data from various pre-built databases. |
| 40 | 36 |
| 41 .. _omamer: https://github.com/DessimozLab/omamer | 37 .. _omamer: https://github.com/DessimozLab/omamer |
| 42 ]]></help> | 38 ]]></help> |