Mercurial > repos > iuc > data_manager_omamer

changeset 2:f8d72275878e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_omamer commit b890cd87ef5cfaa81eda29cc935de224ecb05bb6
author iuc
date Wed, 14 Aug 2024 15:42:46 +0000
parents 57db282ca204
children
files data_manager/macros.xml data_manager/omamer.py data_manager/omamer.xml
diffstat 3 files changed, 16 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/macros.xml	Thu Mar 07 14:28:42 2024 +0000
+++ b/data_manager/macros.xml	Wed Aug 14 15:42:46 2024 +0000
@@ -1,7 +1,7 @@
 
 <macros>
     <token name="@TOOL_VERSION@">2.0.2</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
 
     <xml name="requirements">
         <requirements>
--- a/data_manager/omamer.py	Thu Mar 07 14:28:42 2024 +0000
+++ b/data_manager/omamer.py	Wed Aug 14 15:42:46 2024 +0000
@@ -12,10 +12,13 @@
 
 # List of OMAmer data sets with versions
 OMAMER_DATASETS = {
-    "Primates": "Primates-v2.0.0.h5",
-    "Viridiplantae": "Viridiplantae-v2.0.0.h5",
-    "Metazoa": "Metazoa-v2.0.0.h5",
-    "LUCA": "LUCA-v0.2.5.h5",
+    "Primates_v2.0.0": "Primates-v2.0.0.h5",
+    "Viridiplantae_v2.0.0": "Viridiplantae-v2.0.0.h5",
+    "Metazoa_v2.0.0": "Metazoa-v2.0.0.h5",
+    "LUCA_v0.2.5": "LUCA-v0.2.5.h5",
+    "LUCA_v2.0.0": "LUCA-v2.0.0.h5",
+    "Saccharomyceta": "Saccharomyceta.h5",
+    "Homininae": "Homininae.h5",
 }
 
 DEFAULT_OUTPUT_DIR = "database_omamer"
--- a/data_manager/omamer.xml	Thu Mar 07 14:28:42 2024 +0000
+++ b/data_manager/omamer.xml	Wed Aug 14 15:42:46 2024 +0000
@@ -12,10 +12,13 @@
     <inputs>
         <param name="output_dir" type="text" label="Output Directory" value=""/>
         <param name="name" type="select" label="Database">
-            <option value="Primates">Primates</option>
-            <option value="Viridiplantae">Viridiplantae</option>
-            <option value="Metazoa">Metazoa</option>
-            <option value="LUCA">LUCA</option>
+            <option value="Primates_v2.0.0">Primates_v2.0.0</option>
+            <option value="Viridiplantae_v2.0.0">Viridiplantae_v2.0.0</option>
+            <option value="Metazoa_v2.0.0">Metazoa_v2.0.0</option>
+            <option value="LUCA_v0.2.5">LUCA_v0.2.5</option>
+            <option value="LUCA_v2.0.0">LUCA_v2.0.0</option>
+            <option value="Saccharomyceta">Saccharomyceta</option>
+            <option value="Homininae">Homininae</option>
         </param>
     </inputs>
 
@@ -26,7 +29,7 @@
     <tests>
         <test>
             <param name="output_dir" value="test_galaxy"/>
-            <param name="name" value="Primates"/>
+            <param name="name" value="Primates_v2.0.0"/>
             <output name="output_file" file="out.json"/>
         </test>
     </tests>