diff data_manager/pharokka_db_fetcher.xml @ 1:50caca83e7c9 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_pharokka_database_fetcher/ commit fcbcfe6bfcf007dc489ae035a6f23c07dc64ed31

--- a/data_manager/pharokka_db_fetcher.xml	Thu Apr 20 07:51:43 2023 +0000
+++ b/data_manager/pharokka_db_fetcher.xml	Sun Aug 06 10:11:42 2023 +0000
@@ -1,12 +1,13 @@
 <?xml version="1.0"?>
 <tool id="pharokka_db_fetcher" name="phrokka DB fetcher" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
+    <description>Fetches the DB required for phrokka</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="biotools" />
     <expand macro="requirements" />
     <expand macro="version" />
-    <description>Fetches the DB required for phrokka</description>
+
     <command detect_errors="exit_code">
     <![CDATA[
         python '$__tool_directory__/data_manager_fetch_pharokka_db.py' --out '${out_file}' --version '${version}' 
@@ -14,8 +15,10 @@
     ]]>
     </command>
     <inputs>
-    <param name="test_data_manager" type="hidden" value=""/>
-    <param argument="--version" type="text" value="v1.2.0" help="Check https://github.com/gbouras13/pharokka/blob/c822b4c3b8cf642512a5c236fc4036ad53f48587/bin/databases.py#L102 for current version."/>
+    <param name="test_data_manager" type="boolean" truevalue="--test" falsevalue="" checked="False" label="Copy minimal test DB and create mock data table entry." />
+
+    <!-- <param name="test_data_manager" type="text" value=""/> -->
+    <param argument="--version" type="text" value="1.2.0" help="Check https://github.com/gbouras13/pharokka/blob/c822b4c3b8cf642512a5c236fc4036ad53f48587/bin/databases.py#L102 for current version. The default value is recommended."/>
     </inputs>
     <outputs>
         <data format="data_manager_json" name="out_file" />
@@ -35,6 +38,11 @@
     </test>
     </tests>
     <help>
+        <![CDATA[
+        Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.
+        This data manager fetches the DB using the build-in tool download script.
+        The version must be checked here: https://github.com/gbouras13/pharokka/blob/c822b4c3b8cf642512a5c236fc4036ad53f48587/bin/databases.py#L102
+        ]]>
     </help>
     <expand macro="citations" />
     <expand macro="creator" />