comparison data_manager/data_manager_plant_tribes_scaffolds_download.py @ 5:1550b1741780 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_plant_tribes_scaffolds_downloader commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"

4:93253aebaf2e

parser.add_argument('--config_web_url', dest='config_web_url', help='URL for downloading default configs')

args = parser.parse_args()

with open(args.out_file) as fh:
    params = json.loads(fh.read())
target_directory = params['output_data'][0]['extra_files_path']
make_directory(target_directory)

if args.description is None:
    description = ''

# Get the scaffolds data.
data_manager_dict = download(target_directory, args.web_url, args.config_web_url, description)
# Write the JSON output dataset.
with open(args.out_file, 'w') as fh:
    fh.write(json.dumps(data_manager_dict, sort_keys=True))

5:1550b1741780

parser.add_argument('--config_web_url', dest='config_web_url', help='URL for downloading default configs')

args = parser.parse_args()

with open(args.out_file) as fh:
    params = json.load(fh)
target_directory = params['output_data'][0]['extra_files_path']
make_directory(target_directory)

if args.description is None:
    description = ''

# Get the scaffolds data.
data_manager_dict = download(target_directory, args.web_url, args.config_web_url, description)
# Write the JSON output dataset.
with open(args.out_file, 'w') as fh:
    json.dump(data_manager_dict, fh, sort_keys=True)