annotate data_manager_conf.xml @ 0:ae730ecdc7e7 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
author iuc
date Sun, 19 Apr 2020 09:22:19 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
2 <data_managers>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
3 <data_manager tool_file="data_manager/install_primer_scheme_bedfiles.xml" id="data_manager_primer_scheme_bedfiles">
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
4 <data_table name="primer_scheme_bedfiles">
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
5 <output>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
6 <column name="value" />
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
7 <column name="description" />
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
8 <column name="path" output_ref="output_file" >
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
9 <!-- note: the Python script sanitises the possibly user-supplied scheme name ('value') -->
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
10 <move type="file">
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
11 <source>${path}</source>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">primer_scheme_bedfiles/#echo str($value)#.bed</target>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
13 </move>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/primer_scheme_bedfiles/#echo str($value)#.bed</value_translation>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
15 <value_translation type="function">abspath</value_translation>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
16 </column>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
17 </output>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
18 </data_table>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
19 </data_manager>
ae730ecdc7e7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit f78536f45aa5ce801251a9725e468a47de1be44a"
iuc
parents:
diff changeset
20 </data_managers>