comparison data_manager/install_primer_scheme_bedfiles.xml @ 2:b3710e492ee4 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 61b727022bd1b24a8843830a9c5f34ef66835694"

1:cce5d9327cd6

<tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.10" tool_type="manage_data" profile="19.05">
    <requirements>
        <requirement type="package">python</requirement>
        <requirement type="package" version="2.22.0">requests</requirement>
    </requirements>
    <!-- fetch all the primers in one go -->
    <command detect_errors="exit_code">
    python '$__tool_directory__/install_primer_scheme_bedfiles.py'
        '${output_file}'

                    <has_text text="sample_primer"/>
                </assert_contents>
            </output>        
        </test>
    </tests>
</tool>

2:b3710e492ee4

<tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.11" tool_type="manage_data" profile="19.05">
    <requirements>
        <requirement type="package" version="2.24.0">requests</requirement>
    </requirements>
    <!-- fetch all the primers in one go -->
    <command detect_errors="exit_code">
    python '$__tool_directory__/install_primer_scheme_bedfiles.py'
        '${output_file}'

                    <has_text text="sample_primer"/>
                </assert_contents>
            </output>        
        </test>
    </tests>
    <help><![CDATA[
        Amplicon sequencing for viral pathogens using the `PrimalSeq and iVar`_ relies on
        identifying primer locations in a reference sequence using BED format files. This 
        data manager populates a Galaxy tool data table, either from files provided via
        a history or via the ARTIC_ network Github repository.

        .. _PrimalSeq and iVar: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1618-7
        .. _ARTIC: https://artic.network/
    ]]></help>
    <citations>
      <citation type="doi">10.1186/s13059-018-1618-7</citation>
    </citations>
</tool>