Mercurial > repos > iuc > data_manager_primer_scheme_bedfiles
comparison data_manager/install_primer_scheme_bedfiles.xml @ 5:be70da9dc013 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit 68adfad76cdb5ff13ec9fb49895a3cde2c502514"
| author | iuc |
|---|---|
| date | Sat, 24 Apr 2021 20:56:25 +0000 |
| parents | a2953ef09fe1 |
| children | dd451e45681c |
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| 4:157a5c9ea72a | 5:be70da9dc013 |
|---|---|
| 1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.12" tool_type="manage_data" profile="19.05"> | 1 <tool id="data_manager_primer_scheme_bedfiles" name="BED-format primer scheme data manager" version="0.0.12" tool_type="manage_data" profile="19.05"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package" version="2.24.0">requests</requirement> | 3 <requirement type="package" version="2.24.0">requests</requirement> |
| 4 </requirements> | 4 </requirements> |
| 5 <!-- fetch all the primers in one go --> | 5 <!-- fetch all the primers in one go --> |
| 6 <command detect_errors="exit_code"> | 6 <command detect_errors="exit_code"><![CDATA[ |
| 7 python '$__tool_directory__/install_primer_scheme_bedfiles.py' | 7 python '$__tool_directory__/install_primer_scheme_bedfiles.py' |
| 8 '${output_file}' | 8 '${output_file}' |
| 9 #if $input.input_type == "ARTIC" | 9 #if $input.input_type == "ARTIC" |
| 10 --artic_primers '${input.primers}' | 10 --artic_primers '${input.primers}' |
| 11 #else | 11 #else |
| 12 --primer_file '${input.primer_input}' | 12 --primer_file '${input.primer_input}' |
| 13 --primer_name '${input.primer_name}' | 13 --primer_name '${input.primer_name}' |
| 14 --primer_description '${input.primer_description}' | 14 --primer_description '${input.primer_description}' |
| 15 #end if | 15 #end if |
| 16 </command> | 16 ]]></command> |
| 17 <inputs> | 17 <inputs> |
| 18 <conditional name="input"> | 18 <conditional name="input"> |
| 19 <param name="input_type" label="Choose the source for primer schemes" type="select"> | 19 <param name="input_type" label="Choose the source for primer schemes" type="select"> |
| 20 <option value="ARTIC" selected="true">ARTIC SARS-CoV-2 Github page</option> | 20 <option value="ARTIC" selected="true">ARTIC SARS-CoV-2 Github page</option> |
| 21 <option value="history">History</option> | 21 <option value="history">History</option> |