Mercurial > repos > iuc > data_manager_primer_scheme_bedfiles
comparison data_manager/install_primer_scheme_bedfiles.py @ 1:cce5d9327cd6 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_primer_scheme_bedfiles commit c78a20041ead5aa639003db5311d7a0d88e204b6"
| author | iuc |
|---|---|
| date | Fri, 24 Apr 2020 16:10:30 -0400 |
| parents | ae730ecdc7e7 |
| children | b3710e492ee4 |
comparison
equal
deleted
inserted
replaced
| 0:ae730ecdc7e7 | 1:cce5d9327cd6 |
|---|---|
| 15 DATA_TABLE_NAME = "primer_scheme_bedfiles" | 15 DATA_TABLE_NAME = "primer_scheme_bedfiles" |
| 16 | 16 |
| 17 | 17 |
| 18 def fetch_artic_primers(output_directory, primers): | 18 def fetch_artic_primers(output_directory, primers): |
| 19 primer_sets = { | 19 primer_sets = { |
| 20 "ARTICv1": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V1/nCoV-2019.bed", | 20 "SARS-CoV-2-ARTICv1": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V1/nCoV-2019.bed", |
| 21 "ARTICv2": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V2/nCoV-2019.bed", | 21 "SARS-CoV-2-ARTICv2": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V2/nCoV-2019.bed", |
| 22 "ARTICv3": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V3/nCoV-2019.bed", | 22 "SARS-CoV-2-ARTICv3": "https://raw.githubusercontent.com/artic-network/artic-ncov2019/master/primer_schemes/nCoV-2019/V3/nCoV-2019.bed", |
| 23 } | 23 } |
| 24 | 24 |
| 25 data = [] | 25 data = [] |
| 26 for name, url in primer_sets.items(): | 26 for name, url in primer_sets.items(): |
| 27 if name not in primers: | 27 if name not in primers: |